STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB6332Conserved hypothetical protein; PMID: 9628582 best DB hits: BLAST: ddbj:BAB10862.1; (AB009053) contains similarity to isoamyl; E=0.074. (250 aa)    
Predicted Functional Partners:
RB4859
Probable RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.728
RB5468
Hypothetical protein-signal peptide and transmembrane prediction; PMID: 10567266 best DB hits: PFAM: PF00561; alpha/beta hydrolase fold; E=0.1.
  
     0.670
RB5143
Conserved hypothetical protein; PMID: 10470850 best DB hits: BLAST: ddbj:BAB09588.1; (AB018118) gene_id:MRI1.6~pir D64592~similar to; E=8e-10 pir:S77300; hypothetical protein slr1403 - Synechocystis sp. (strain; E=0.018 PFAM: PF02012; BNR repeat; E=0.076.
  
     0.659
RB8789
Best DB hits: BLAST: pir:T35497; hypothetical protein SC6E10.10 - Streptomyces coelicolor; E=0.14 gb:AAG54838.1; AE005229_1 (AE005229) putative RTX family exoprotein; E=0.87.
  
 
   0.652
RB5421
PMID: 9406417 PMID: 11157277 best DB hits: BLAST: pir:T18266; cycloinulo-oligosaccharide fructanotransferase (EC; E=0.10 gb:AAG47946.1; AF222787_1 (AF222787) cycloinulo-oligosaccharide; E=0.22.
  
     0.634
RB5084
PMID: 11997336 best DB hits: BLAST: gb:AAA65701.1; (U12424) mitochondrial glycerol-3-phosphate; E=0.004 pir:G02093; glycerol-3-phosphate dehydrogenase - human ----- gb:; E=0.004 gb:AAB50200.1; (U79250) glycerol-3-phosphate dehydrogenase [Homo; E=0.004 COG: AF0273; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; E=0.001 PFAM: PF01224; FAD-dependent glycerol-3-phospha; E=3e-05 PF01134; Glucose inhibited division prote; E=0.029 PF00070; Pyridine nucleotide-disulphide o; E=0.00038.
  
     0.629
phoD
Probable alkaline phosphatase D; PMID: 8760916 PMID: 25878 best DB hits: BLAST: swissprot:P42251; PPBD_BACSU ALKALINE PHOSPHATASE D PRECURSOR; E=6e-09 pir:F83157; hypothetical protein PA3910 [imported] - Pseudomonas; E=5e-08 pir:T35097; probable secreted alkaline phosphatase - Streptomyces; E=2e-06.
  
     0.627
RB6517
Probable ECF sigma factor (sigma-70 family); PMID: 8843436 best DB hits: BLAST: embl:CAC17654.1; (AL450450) putative ECF sigma factor; E=0.001 pir:G83282; probable sigma-70 factor, ECF subfamily PA2896; E=0.003 gb:AAA67931.1; (U16817) putative alternative sigma factor; E=0.014 COG: PA2896; COG1595 DNA-directed RNA polymerase specialized sigma; E=3e-04 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=3.9e-08 PF01603; Protein phosphatase 2A regulatory; E=0.46.
  
     0.608
RB13162
Conserved hypothetical protein-putative eukaryotic thiol (cysteine) proteases; PMID: 8843436 best DB hits: BLAST: embl:CAB56147.1; (AL117669) hypothetical protein [Streptomyces; E=7e-12 embl:CAB55704.1; (AL117387) putative secreted protein; E=4e-09 embl:CAB94651.1; (AL359215) putative polysaccharide lyase; E=1e-04.
  
     0.607
RB5280
Similar to extracellular sucrase; PMID: 7778976 PMID: 8086457 PMID: 11722934 best DB hits: BLAST: pir:S47527; extracellular sucrase - Zymomonas mobilis ----- prf:; E=0.10 swissprot:Q60115; INVB_ZYMMO EXTRACELLULAR SUCRASE; E=0.24 gb:AAC36942.1; (L33403) extracellular sucrase [Zymomonas mobilis]; E=0.24.
  
     0.606
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.