STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB6357Conserved hypothetical protein; PMID: 10710307 best DB hits: BLAST: pir:D81161; conserved hypothetical protein NMB0759 [imported] -; E=2e-10 pir:A81944; hypothetical protein NMA0970 [imported] - Neisseria; E=9e-10 pir:G82199; conserved hypothetical protein VC1435 [imported] -; E=8e-06 COG: NMB0759; COG2836 Uncharacterized BCR; E=2e-11. (273 aa)    
Predicted Functional Partners:
RB6355
Probable iron-sulfur protein; PMID: 10984043 best DB hits: BLAST: pir:D83130; probable iron-sulfur protein PA4131 [imported] -; E=7e-48 pir:G82371; FixG-related protein VC0036 [imported] - Vibrio cholerae; E=1e-45 pir:G81081; ferredoxin, 4Fe-4S bacterial type NMB1454 [imported] -; E=2e-45 COG: PA4131; COG0348 Polyferredoxin; E=6e-49 PFAM: PF00037; 4Fe-4S binding domain; E=0.27.
 
     0.949
RB6353
PMID: 10952301 best DB hits: BLAST: pir:C82200; cytochrome c oxidase, chain CcoP VC1439 [similarity] -; E=7e-15 gb:AAB02559.1; (U58092) cbb3-type cytochrome c oxidase CcoP; E=1e-13 pir:A83452; probable cytochrome c PA1552 [imported] - Pseudomonas; E=1e-13 COG: VC1439; COG2010 Cytochrome c, mono- and diheme variants; E=7e-16 PFAM: PF00034; Cytochrome c; E=4.2e-11.
 
     0.940
RB6350
PMID: 10984043 best DB hits: BLAST: pir:E83450; probable cytochrome oxidase subunit (cbb3-type) PA1557; E=1e-134 pir:E81050; cytochrome-c oxidase (EC 1.9.3.1) fixN chain NMB1725; E=1e-132 pir:C83452; probable cytochrome oxidase subunit (cbb3-type) PA1554; E=1e-129 COG: PA1557; COG3278 Cbb3-type cytochrome oxidase, subunit 1; E=1e-135 NMB1724; COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit; E=8e-38 slr1137; COG0843 Heme/copper-type cytochrome/quinol oxidases,; E=6e-12 PFAM: PF00115; Cytochrome C and Quinol oxidase poly; E=3.4e-65 PF02433; Cytochrome C oxidase, mono-heme subu [...]
 
   
 0.916
RB6360
PMID: 10984043 best DB hits: BLAST: pir:F83451; probable cation-transporting P-type ATPase PA1549; E=2e-85 pir:A82200; cation transport ATPase, E1-E2 family VC1437 [imported]; E=3e-77 pir:D81129; cation transport ATPase, E1-E2 family NMB1042 [imported]; E=6e-74 COG: PA1549; COG2217 Cation transport ATPases; E=2e-86 PFAM: PF00403; Heavy-metal-associated domain; E=5.3e-08 PF00122; E1-E2 ATPase; E=4.1e-72 PF00702; haloacid dehalogenase-like hydro; E=2.6e-22.
 
   
 0.898
RB6363
PMID: 10984043 best DB hits: BLAST: pir:E83451; conserved hypothetical protein PA1548 [imported] -; E=0.036 embl:CAA64890.1; (X95634) fixS [Bradyrhizobium japonicum]; E=0.30 pir:C81074; fixS protein NMB1516 [imported] - Neisseria; E=0.62 COG: PA1548; COG3197 Uncharacterized protein, possibly involved in; E=0.003.
 
     0.861
RB6356
Similar to nitrogen fixation protein fixH; PMID: 8661920 best DB hits: BLAST: embl:CAA64888.1; (X95634) fixH [Bradyrhizobium japonicum] -----; E=0.18.
       0.794
RB6351
Hypothetical protein.
       0.752
RB6364
PMID: 10684935 best DB hits: BLAST: pir:E81578; conserved hypothetical protein CP0417 [imported] -; E=8e-13 pir:C71559; probable outer membrane leader peptide CT073 - Chlamydia; E=9e-13 pir:A81713; conserved hypothetical protein TC0345 [imported] -; E=2e-12.
       0.704
RB6349
Hypothetical protein.
       0.566
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.