STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB6384Probable thioredoxin related protein; PMID: 7934829 best DB hits: BLAST: swissprot:P35160; RESA_BACSU RESA PROTEIN ----- pir: S45556; E=3e-14 pir:E69891; cytochrome c biogenesis protein CycX homolog homolog; E=1e-12 ddbj:BAB06587.1; (AP001516) thioldisulfide interchange protein; E=1e-10 COG: BS_resA; COG0526 Thiol-disulfide isomerase and thioredoxins; E=2e-15 PFAM: PF00578; AhpC/TSA family; E=0.0027 PF02630; SCO1/SenC; E=0.28 PF00085; Thioredoxin; E=1.8e-08. (451 aa)    
Predicted Functional Partners:
RB8674
Probable thioredoxin; Best DB hits: BLAST: pir:H71366; probable thioredoxin - syphilis spirochete ----- gb:; E=2e-11 gb:AAD00775.1; (U95250) thioredoxin [Treponema pallidum]; E=2e-11 ddbj:BAB06587.1; (AP001516) thioldisulfide interchange protein; E=7e-09 COG: TP0100; COG0526 Thiol-disulfide isomerase and thioredoxins; E=2e-12 XF2174; COG3118 Thioredoxin domain-containing protein; E=7e-07 XF1990; COG0526 Thiol-disulfide isomerase and thioredoxins; E=1e-06 PFAM: PF00085; Thioredoxin; E=0.34.
 
     0.737
RB6386
Conserved hypothetical protein; PMID: 10484179 best DB hits: BLAST: ddbj:BAB07065.1; (AP001518) BH3346~unknown conserved protein in; E=2e-11 swissprot:P49304; MOCC_RHIME RHIZOPINE CATABOLISM PROTEIN MOCC; E=0.84 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=0.38.
       0.645
RB6387
Conserved hypothetical protein; PMID: 10910347 best DB hits: BLAST: pir:G82780; conserved hypothetical protein XF0649 [imported] -; E=3e-13 embl:CAA97104.1; (Z72886) ORF YGR101w [Saccharomyces cerevisiae]; E=2e-10 pir:D71258; probable glpG protein - syphilis spirochete -----; E=1e-09 COG: XF0649; COG0705 Uncharacterized membrane protein (homolog of; E=3e-14 PFAM: PF01694; Rhomboid family; E=2.6e-11.
       0.534
RB6388
Hypothetical protein.
       0.491
RB6389
Conserved hypothetical protein; PMID: 10865958 best DB hits: BLAST: swissprot:P54466; YQFA_BACSU HYPOTHETICAL 35.6 KD PROTEIN IN; E=4e-73 ddbj:BAB05076.1; (AP001511) BH1357~unknown conserved protein in; E=3e-72 embl:CAA12151.1; (AJ224829) ORF1 [Bacillus megaterium]; E=2e-71.
       0.491
dipZ
DipZ protein, thioredoxin related to cytochrome c; PMID: 9634230 best DB hits: BLAST: swissprot:Q10801; DIPZ_MYCTU DIPZ PROTEIN ----- pir: E70923; E=2e-18 embl:CAB58305.1; (AL121854) hypothetical protein SCJ33.06c; E=2e-11 gb:AAF45468.2; (AE002760) CG12547 gene product [Drosophila; E=2e-09 COG: Rv2874_2; COG0526 Thiol-disulfide isomerase and thioredoxins; E=2e-19 Rv2521; COG1225 Peroxiredoxins; E=0.007 DR2242; COG0450 Thiol - alkyl hydroperoxide reductases; E=0.009.
  
     0.486
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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