STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB6486PMID: 9371463 best DB hits: BLAST: pir:H69064; serinethreonine protein kinase related protein -; E=3e-13 pir:C75264; probable serinethreonine protein kinase - Deinococcus; E=1e-08 swissprot:P42111; YXAL_BACSU HYPOTHETICAL 38.5 KDA PROTEIN IN; E=5e-07 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=3e-14 DR2518_2; COG1520 Uncharacterized proteins of WD40-like repeat; E=5e-09 BS_yxaL; COG1520 Uncharacterized proteins of WD40-like repeat family; E=4e-08 PFAM: PF01011; PQQ enzyme repeat; E=0.0066. (455 aa)    
Predicted Functional Partners:
RB10839
Best DB hits: BLAST: pir:T36293; probable serinethreonine protein kinase - Streptomyces; E=0.15 gb:AAG20933.1; (AE005160) Vng6297c [Halobacterium sp. NRC-1]; E=0.24 pir:C82804; conserved hypothetical protein XF0464 [imported] -; E=0.56 PFAM: PF01011; PQQ enzyme repeat; E=0.045.
  
     0.763
RB12068
Probable serine/threonine protein kinase afsK; PMID: 8063104 PMID: 8635757 PMID: 12000953 best DB hits: BLAST: gb:AAB89850.1; (AE001008) conserved hypothetical protein; E=2e-06 swissprot:P54741; AFSK_STRCO SERINETHREONINE PROTEIN KINASE AFSK; E=1e-05 embl:CAB88430.1; (AL353815) serinethreonine protein kinase; E=1e-05 COG: AF1399; COG1520 Uncharacterized proteins of WD40-like repeat family; E=1e-07 PFAM: PF01011; PQQ enzyme repeat; E=0.00048.
  
     0.763
RB5380
PMID: 8063104 best DB hits: BLAST: pir:H69064; serinethreonine protein kinase related protein -; E=9e-06 swissprot:P54741; AFSK_STRCO SERINETHREONINE PROTEIN KINASE AFSK; E=0.007 swissprot:P54742; AFSK_STRGR SERINETHREONINE PROTEIN KINASE AFSK; E=0.007 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=8e-07 PFAM: PF01011; PQQ enzyme repeat; E=0.0098.
  
     0.763
RB8505
Best DB hits: BLAST: pir:H69064; serinethreonine protein kinase related protein -; E=4e-04 swissprot:P77774; YFGL_ECOLI HYPOTHETICAL 41.9 KD PROTEIN IN; E=0.004 gb:AAG20856.1; (AE005154) Vng6189h [Halobacterium sp. NRC-1]; E=0.007 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=4e-05 PFAM: PF01011; PQQ enzyme repeat; E=0.03.
  
     0.760
adh
Probable alcohol dehydrogenase [acceptor]; PMID: 2001402 best DB hits: BLAST: swissprot:P28036; DHET_ACEPO ALCOHOL DEHYDROGENASE [ACCEPTOR]; E=0.003 gb:AAB89850.1; (AE001008) conserved hypothetical protein; E=0.003 swissprot:Q44002; DHET_ACEEU ALCOHOL DEHYDROGENASE [ACCEPTOR]; E=0.004 COG: AF1399; COG1520 Uncharacterized proteins of WD40-like repeat family; E=3e-04 PFAM: PF01011; PQQ enzyme repeat; E=5.5e-05.
  
     0.755
RB10124
Best DB hits: BLAST: pir:A82580; polyvinylalcohol dehydrogenase XF2259 [imported] -; E=0.003 pir:H69064; serinethreonine protein kinase related protein -; E=0.013 pir:C83171; conserved hypothetical protein PA3800 [imported] -; E=0.14 COG: XF2259; COG1520 Uncharacterized proteins of WD40-like repeat family; E=3e-04 PFAM: PF01011; PQQ enzyme repeat; E=0.0033.
  
     0.753
RB983
Probable serine/threonine protein kinase; PMID: 8063104 best DB hits: BLAST: swissprot:P54741; AFSK_STRCO SERINETHREONINE PROTEIN KINASE AFSK; E=0.001 embl:CAB88430.1; (AL353815) serinethreonine protein kinase; E=0.001 pir:H69064; serinethreonine protein kinase related protein -; E=0.001 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=1e-04 PFAM: PF01011; PQQ enzyme repeat; E=0.77.
  
     0.750
RB107
Conserved hypothetical protein; PMID: 8921874 best DB hits: BLAST: pir:A58519; hypothetical 345 protein - Streptomyces coelicolor; E=0.14 pir:H69064; serinethreonine protein kinase related protein -; E=0.20 gb:AAG31169.1; (AF314961) unknown [Salmonella typhimurium]; E=0.64 PFAM: PF01011; PQQ enzyme repeat; E=0.2.
  
     0.743
RB8639
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAG20856.1; (AE005154) Vng6189h [Halobacterium sp. NRC-1]; E=5e-05 pir:H69064; serinethreonine protein kinase related protein -; E=0.005 pir:C82804; conserved hypothetical protein XF0464 [imported] -; E=0.053 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=5e-04 PFAM: PF01011; PQQ enzyme repeat; E=0.27.
  
     0.741
hemN
Coproporphyrinogen III oxidase; PMID: 10484179 PMID: 7768836 best DB hits: BLAST: ddbj:BAB05062.1; (AP001511) coproporphyrinogen III oxidase; E=1e-32 swissprot:O67886; HEMN_AQUAE OXYGEN-INDEPENDENT COPROPORPHYRINOGEN; E=2e-31 ddbj:BAB10571.1; (AB008265) oxygen-independent; E=6e-30 COG: BH1343; COG0635 Coproporphyrinogen III oxidase and related FeS; E=1e-33 PFAM: PF02473; Oxygen-independent Coproporphy; E=9.5e-08.
 
     0.738
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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