STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB6520Putative glycosyl transferase; Best DB hits: BLAST: gb:AAD46732.1; AF078736_12 (AF078736) putative glycosyl; E=7e-20 gb:AAD50490.1; AF172324_8 (AF172324) WbnE [Escherichia coli]; E=9e-18 gb:AAF23993.1; (AF035937) WbpT [Pseudomonas aeruginosa]; E=1e-16 COG: DR1555; COG0438 Predicted glycosyltransferases; E=6e-14 PFAM: PF00534; Glycosyl transferases group 1; E=1.9e-35. (374 aa)    
Predicted Functional Partners:
RB6523
Hypothetical protein.
       0.806
hpt
Hypoxanthine-guanine phosphoribosyltransferase; PMID: 10192928 best DB hits: BLAST: pir:T36331; probable hypoxanthine phosphoribosyltransferase -; E=6e-27 ddbj:BAB03803.1; (AP001507) hypoxanthine-guanine; E=8e-23 embl:CAB60853.1; (AL132877) predicted using Genefinder; E=1e-22 COG: BH0084; COG0634 Hypoxanthine-guanine phosphoribosyltransferase; E=7e-24 BU169; COG0462 Phosphoribosylpyrophosphate synthetase; E=0.002 APE2071; COG2236 Predicted phosphoribosyltransferases; E=0.007 PFAM: PF00156; Phosphoribosyl transferase domai; E=1.5e-15; Belongs to the purine/pyrimidine phosphoribosyltrans [...]
       0.806
RB6525
Hypothetical protein.
       0.773
RB12590
Probable hexosyltransferase; PMID: 11157937 best DB hits: BLAST: swissprot:Q46638; AMSK_ERWAM AMYLOVORAN BIOSYNTHESIS PROTEIN AMSK; E=9e-14 ddbj:BAB07095.1; (AP001518) lipopolysaccharide biosynthesis; E=1e-13 pir:A82265; probable polysaccharide biosynthesis protein VC0925; E=3e-13 COG: BH3376; COG0438 Predicted glycosyltransferases; E=1e-14 PFAM: PF00534; Glycosyl transferases group 1; E=1.3e-32.
  
     0.761
RB2001
Probable glycosyltransferase; PMID: 11371519 best DB hits: BLAST: pir:G69146; capsular polysaccharide biosynthesis protein -; E=2e-10 pir:E72354; probable hexosyltransferase (EC 2.4.1.-) TM0622 -; E=9e-10 pir:T44601; probable glycosyltransferase [imported] - Rhizobium; E=5e-08 COG: MTH362; COG0438 Predicted glycosyltransferases; E=2e-11 PFAM: PF00534; Glycosyl transferases group 1; E=1.3e-18.
  
     0.759
RB6528
Hypothetical protein.
       0.572
RB2471
Conserved hypothetical protein-putative poly(glycerol-phosphate) alpha-glucosyltransferase; PMID: 8905231 best DB hits: BLAST: pir:S74778; hypothetical protein slr1077 - Synechocystis sp. (strain; E=5e-34 gb:AAD43836.1; AF076290_6 (AF076290) putative mannosyltransferase; E=4e-16 embl:CAB43611.1; (AJ239004) galactosyl transferase [Streptococcus; E=9e-11 COG: slr1077; COG0438 Predicted glycosyltransferases; E=5e-35 PFAM: PF00534; Glycosyl transferases group 1; E=5e-21.
  
     0.463
RB3751
UDP-glucose 4-epimerase homolog; PMID: 9174344 best DB hits: BLAST: gb:AAB84886.1; (AE000823) UDP-glucose 4-epimerase homolog; E=4e-65 pir:C69149; conserved hypothetical protein MTH380 - Methanobacterium; E=4e-65 gb:AAG18703.1; (AE004975) GDP-D-mannose dehydratase; Gmd; E=9e-61 COG: MTH380; COG0451 Nucleoside-diphosphate-sugar epimerases; E=4e-66 aq_1069; COG1087 UDP-glucose 4-epimerase; E=1e-26 PFAM: PF00106; short chain dehydrogenase; E=0.0021 PF01073; 3-beta hydroxysteroid dehydrogenase; E=1.3e-07 PF01370; NAD dependent epimerase/dehydratase; E=3.7e-88.
  
    0.452
RB9855
Conserved hypothetical protein-putative transmembrane protein; Best DB hits: BLAST: pir:E71127; hypothetical protein PH0786 - Pyrococcus horikoshii; E=0.013 pir:T32472; hypothetical protein F08F1.7 - Caenorhabditis elegans; E=0.87 PFAM: PF02366; Dolichyl-phosphate-mannose-prote; E=0.00021.
  
     0.413
amsG
UDP-galactose-lipid carrier transferase; PMID: 7596293 best DB hits: BLAST: swissprot:Q57491; Y872_HAEIN HYPOTHETICAL SUGAR TRANSFERASE HI0872; E=3e-56 swissprot:Q46628; AMSG_ERWAM UDP-GALACTOSE-LIPID CARRIER; E=5e-56 pir:S61891; undecaprenyl-phosphate galactosephosphotransferase (EC; E=5e-56 COG: HI0872; COG2148 Sugar transferases involved in lipopolysaccharide; E=2e-57 PFAM: PF00895; ATP synthase protein 8; E=0.37 PF02397; Bacterial sugar transferase; E=3.6e-89.
  
  
 0.404
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.