STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB6536Hypothetical protein. (73 aa)    
Predicted Functional Partners:
RB6535
Hypothetical protein; PMID: 12093901.
       0.675
galM-2
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
       0.675
RB6538
Sodium/glucose cotransporter; PMID: 8652595 best DB hits: BLAST: swissprot:P31448; YIDK_ECOLI HYPOTHETICAL 62.1 KD PROTEIN IN; E=8e-94 gb:AAG58882.1; AE005599_14 (AE005599) putative cotransporter; E=2e-93 ddbj:BAB05941.1; (AP001514) Na+myo-inositol cotransporter; E=7e-87 COG: yidK; COG0591 Na+/proline, Na+/panthothenate symporters and related; E=8e-95 BH2222; COG0591 Na+/proline, Na+/panthothenate symporters and; E=7e-88 panF; COG0591 Na+/proline, Na+/panthothenate symporters and related; E=4e-11 PFAM: PF00474; Sodium:solute symporter family; E=2.8e-33; Belongs to the sodium:solute sym [...]
       0.569
RB6539
Hypothetical protein-transmembrane prediction.
       0.432
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.