STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB6596Hypothetical protein. (230 aa)    
Predicted Functional Partners:
RB1308
Probable phytoene dehydrogenase; PMID: 2263648 best DB hits: BLAST: gb:AAF63149.1; AC011001_19 (AC011001) Similar to phytoene; E=1e-09 swissprot:P22871; CRTI_ERWHE PHYTOENE DEHYDROGENASE (PHYTOENE; E=4e-05 gb:AAA64981.1; (M87280) phytoene dehydrogenase [Erwinia; E=4e-05 COG: BH1848; COG1233 Phytoene dehydrogenase and related proteins; E=6e-06 PFAM: PF01134; Glucose inhibited division prot; E=0.017 PF01593; Flavin containing amine oxidase; E=0.08 PF00732; GMC oxidoreductases; E=0.049.
  
     0.673
RB1588
Similar to acyl carrier protein; PMID: 8759840 best DB hits: BLAST: gb:AAB68774.1; (U94886) hemolysin [Brachyspira hyodysenteriae]; E=4e-04 embl:CAC08813.1; (AJ279022) putative acyl carrier protein; E=0.053 pir:T11213; probable acyl carrier protein - Streptomyces glaucescens; E=0.067.
  
     0.631
crtI-2
Probable phytoene dehydrogenase; PMID: 2254247 best DB hits: BLAST: gb:AAF63149.1; AC011001_19 (AC011001) Similar to phytoene; E=7e-15 gb:AAG29233.1; AC079732_4 (AC079732) hypothetical protein; E=4e-12 ddbj:BAB05567.1; (AP001513) BH1848~unknown conserved protein in; E=6e-11 COG: BH1848; COG1233 Phytoene dehydrogenase and related proteins; E=6e-12 VC0806; COG2509 Uncharacterized FAD-dependent dehydrogenases; E=0.001 DR0093; COG1233 Phytoene dehydrogenase and related proteins; E=0.006 PFAM: PF02032; Phytoene dehydrogenase related; E=6.5e-05 PF01494; FAD binding domain; E=0.13 PF00070; Py [...]
  
     0.558
RB3476
Conserved hypothetical protein; PMID: 8688087 best DB hits: BLAST: swissprot:Q58408; YA02_METJA HYPOTHETICAL PROTEIN MJ1002 -----; E=4e-23 pir:F75071; hypothetical protein PAB1730 - Pyrococcus abyssi (strain; E=3e-22 pir:B71094; hypothetical protein PH1015 - Pyrococcus horikoshii; E=2e-21 COG: MJ1002; COG1624 Uncharacterized ACR; E=4e-24 PFAM: PF02457; Domain of unknown function DUF147; E=1.2e-26.
  
     0.510
RB4958
Similar to adenylate cyclase; PMID: 9171404 best DB hits: BLAST: ddbj:BAA14001.1; (D89626) adenylate cyclase [Anabaena sp.]; E=0.018 pir:S75331; penicillin-binding protein 1B mrcB - Synechocystis sp; E=0.10 ddbj:BAB11326.1; (AB016886) gene_id:MCA23.11~unknown protein; E=0.14 COG: slr1710; COG0744 Membrane carboxypeptidase (penicillin-binding; E=0.010 PFAM: PF02590; Uncharacterized ACR, COG1576; E=0.23 PF00498; FHA domain; E=1.6e-09.
  
     0.479
RB6599
Arylsulfatase A; PMID: 7910580 best DB hits: BLAST: embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=1e-38 gb:AAB03341.1; (U62317) arylsulfatase A [Homo sapiens]; E=6e-38 pdb:1E2S; P Chain P, Crystal Structure Of An Arylsulfatase A; E=1e-37 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=2e-29 PFAM: PF00884; Sulfatase; E=6.7e-42.
       0.409
RB5401
Hypothetical protein.
  
     0.406
RB6603
PMID: 8997703 best DB hits: BLAST: pir:C75037; methanol dehydrogenase regulatory protein (moxr-3); E=9e-65 pir:E70792; probable regulatory protein - Mycobacterium tuberculosis; E=2e-64 pir:B71126; hypothetical protein PH0776 - Pyrococcus horikoshii; E=2e-63 COG: PAB0848; COG0714 MoxR-like ATPases; E=9e-66 PFAM: PF00004; ATPase family associated with; E=6.4e-06 PF02223; Thymidylate kinase; E=0.36 PF01078; Magnesium chelatase, subunit; E=4.3e-05.
       0.400
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.