STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB6615Probable secreted glycosyl hydrolase; PMID: 8843436 best DB hits: BLAST: embl:CAB94634.1; (AL359215) putative secreted glycosyl hydrolase; E=1e-12 pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=3e-11 pir:T35028; probable glycosyl hydrolase - Streptomyces coelicolor; E=0.054. (230 aa)    
Predicted Functional Partners:
purD
Phosphoribosylamine-glycine ligase; PMID: 8299947 best DB hits: BLAST: pir:T46882; phosphoribosylamine--glycine ligase (EC 6.3.4.13); E=1e-108 pir:I67805; purine synthesis multifunctional protein - mouse -----; E=1e-108 gb:AAC53250.1; (U20892) glycinamide ribonucleotide synthetase; E=1e-107 COG: BH0634; COG0151 Phosphoribosylamine-glycine ligase; E=1e-108 PFAM: PF02844; Phosphoribosylglycinamide syn; E=6.3e-55 PF02842; Phosphoribosylglycinamide syn; E=2.5e-30 PF01837; Domain of unknown function DU; E=0.23.
  
    0.777
RB12084
Hypothetical protein.
  
     0.765
RB7152
Probable secreted glycosyl hydrolase; PMID: 8843436 best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=5e-09 embl:CAB94634.1; (AL359215) putative secreted glycosyl hydrolase; E=3e-07 PFAM: PF01302; CAP-Gly domain; E=0.33.
  
     0.750
RB3317
PMID: 9584149 best DB hits: BLAST: gb:AAC23913.1; (AF039207) NADH-dependent dehydrogenase homolog; E=3e-13 pir:B72359; lipopolysaccharide biosynthesis protein BplA -; E=2e-12 embl:CAC24034.1; (AL512980) ORF-c34_017 [Sulfolobus solfataricus]; E=2e-08 COG: TM0585; COG0673 Predicted dehydrogenases and related proteins; E=2e-13 PFAM: PF01408; Oxidoreductase family, NAD-bin; E=1.1e-12.
  
     0.726
RB9196
Probable secreted glycosyl hydrolase; Best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=1e-05 embl:CAB94634.1; (AL359215) putative secreted glycosyl hydrolase; E=1e-04.
  
    0.720
RB4707
Probable large multifunctional protein-putative glycosyl hydrolase; Best DB hits: BLAST: embl:CAB45032.1; (AL078635) putative large multi-functional; E=6e-13 embl:CAB58265.1; (AL121849) putative multi-domain protein; E=3e-10.
  
     0.711
RB3944
Conserved hypothetical protein; Best DB hits: BLAST: embl:CAB94634.1; (AL359215) putative secreted glycosyl hydrolase; E=9e-10 pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=5e-08 embl:CAB45032.1; (AL078635) putative large multi-functional; E=0.001.
  
     0.706
RB7235
Hypothetical protein-signal peptide prediction.
  
     0.702
RB4621
Hypothetical protein-signal peptide prediction; Best DB hits: PFAM: PF00034; Cytochrome c; E=0.003.
  
     0.698
RB3442
Probable dehydrogenase; PMID: 10086841 best DB hits: BLAST: ddbj:BAB05939.1; (AP001514) dehydrogenase [Bacillus halodurans]; E=1e-08 pir:B72359; lipopolysaccharide biosynthesis protein BplA -; E=2e-07 pir:D71201; hypothetical protein PH1881 - Pyrococcus horikoshii; E=5e-07 COG: BH2220; COG0673 Predicted dehydrogenases and related proteins; E=1e-09 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=1.2e-14.
  
     0.680
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.