STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB6629Conserved hypothetical protein; PMID: 10360571 best DB hits: BLAST: pir:F72424; hypothetical protein - Thermotoga maritima (strain MSB8); E=0.28. (708 aa)    
Predicted Functional Partners:
RB6632
Hypothetical protein.
       0.773
RB5921
Similar to surface protein; Best DB hits: BLAST: gb:AAB53736.1; (U95056) surface protein Lk90 [Leptospira; E=0.38 PFAM: PF02368; Bacterial Ig-like domain (grou; E=6.3e-05.
  
     0.768
RB5253
Similar to S-layer related protein; PMID: 7522196 best DB hits: BLAST: swissprot:P35824; SLAP_BACCI S-LAYER RELATED PROTEIN PRECURSOR; E=0.18 PFAM: PF02369; Bacterial Ig-like domain (group 1); E=0.1 PF02368; Bacterial Ig-like domain (group 2); E=0.013.
  
     0.749
RB7120
Conserved hypothetical protein; PMID: 10984043 best DB hits: BLAST: pir:A83355; hypothetical protein PA2336 [imported] - Pseudomonas; E=0.022.
  
     0.749
RB6100
Hypothetical protein-transmembrane prediction; Best DB hits: PFAM: PF02368; Bacterial Ig-like domain (group; E=0.091.
  
     0.746
RB6633
Hypothetical protein.
       0.746
butB
PMID: 7522196 best DB hits: BLAST: swissprot:P35824; SLAP_BACCI S-LAYER RELATED PROTEIN PRECURSOR; E=4e-04 PFAM: PF02368; Bacterial Ig-like domain (group 2; E=0.013.
  
     0.740
RB11670
PMID: 2974033 best DB hits: BLAST: pir:A75265; ferric enterobactin esterase-related protein -; E=0.002 COG: DR2506; COG2382 Enterochelin esterase and related enzymes; E=2e-04.
  
     0.724
RB6190
Conserved hypothetical protein; Best DB hits: BLAST: embl:CAC24059.1; (AL512981) Hypothetical [Sulfolobus; E=0.17.
  
     0.721
RB6627
Hypothetical protein.
       0.718
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.