STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB6663Conserved hypothetical protein; PMID: 10360571 best DB hits: BLAST: pir:G72299; conserved hypothetical protein - Thermotoga maritima; E=0.001 gb:AAB88948.1; (AE000945) conserved hypothetical transmembrane; E=0.21 COG: TM1060; COG0477 Permeases of the major facilitator superfamily; E=1e-04. (461 aa)    
Predicted Functional Partners:
RB183
Conserved hypothetical protein-putative outer membrane protein; PMID: 12093901 best DB hits: BLAST: gb:AAD51069.1; AF175716_1 (AF175716) immunoreactive 52kD antigen; E=0.045 pir:S75812; hypothetical protein slr1270 - Synechocystis sp. (strain; E=0.17 PFAM: PF02321; Outer membrane efflux protein; E=0.18.
  
     0.612
RB8773
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAG20870.1; (AE005155) Vng6208c [Halobacterium sp. NRC-1]; E=3e-04 pir:E75514; B-cell receptor associated protein-related protein -; E=8e-04 pir:S75156; hypothetical protein slr1768 - Synechocystis sp. (strain; E=8e-04 COG: DR0482; COG0330 Membrane protease subunits, stomatin/prohibitin; E=8e-05.
 
     0.604
RB9513
Probable mu-protocadherin-putative cell-suface protein; PMID: 1501644 best DB hits: BLAST: gb:AAF70456.1; AF221952_1 (AF221952) mu-protocadherin [Rattus; E=5e-08 gb:AAF45927.1; (AE003430) CG15570 gene product [Drosophila; E=3e-07 embl:CAC16087.1; (AJ289697) zona pellucida protein 1 [Gallus; E=5e-07 COG: VC1711; COG1032 Fe-S oxidoreductases family 2; E=6e-04.
  
     0.584
RB8770
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAG20870.1; (AE005155) Vng6208c [Halobacterium sp. NRC-1]; E=7e-05 pir:E75514; B-cell receptor associated protein-related protein -; E=0.016 COG: DR0482; COG0330 Membrane protease subunits, stomatin/prohibitin; E=0.002.
  
     0.577
RB6666
Hypothetical protein.
       0.518
RB6661
Hypothetical protein.
       0.507
RB1036
Hypothetical protein-transmembrane prediction.
  
     0.455
RB5128
Conserved hypothetical protein; PMID: 10984043 best DB hits: BLAST: pir:B83386; hypothetical protein PA2078 [imported] - Pseudomonas; E=7e-14 swissprot:P55493; Y4IJ_RHISN HYPOTHETICAL 65.5 KD PROTEIN Y4IJ; E=2e-13 swissprot:P55496; Y4IM_RHISN HYPOTHETICAL 47.1 KD PROTEIN Y4IM; E=1e-11 PFAM: PF00034; Cytochrome c; E=0.064.
  
     0.446
RB89
Hypothetical protein; Best DB hits: PFAM: PF00975; Thioesterase domain; E=0.51 PF00561; alpha/beta hydrolase fold; E=0.084.
  
    0.432
RB9684
Best DB hits: BLAST: pir:F83350; hypothetical protein PA2362 [imported] - Pseudomonas; E=3e-05 pir:G83437; hypothetical protein PA1668 [imported] - Pseudomonas; E=0.006.
  
     0.428
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.