STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sodASuperoxide dismutase, Mn family; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (228 aa)    
Predicted Functional Partners:
noxA
Probable NADH oxidase; Best DB hits: BLAST: pir:B82434; probable NADH oxidase VCA0644 [imported] - Vibrio; E=1e-102 gb:AAK04884.1; AE006312_4 (AE006312) NADH oxidase [Lactococcus; E=3e-99 gb:AAB90837.1; (AE001077) NADH oxidase (noxA-3) [Archaeoglobus; E=2e-75 COG: VCA0644_1; COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; E=5e-87 BH0613; COG1251 NAD(P)H-nitrite reductase; E=1e-18 PFAM: PF01266; D-amino acid oxidase; E=0.47 PF02032; Phytoene dehydrogenase related; E=0.14 PF00070; Pyridine nucleotide-disulphide; E=8.8e-72.
  
 
 0.937
citB
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
   
 
 0.927
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
 
 0.919
rpsO
Probable 30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
  
 
 0.911
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
   
 
 0.907
rpsI
30S ribosomal protein S9; PMID: 3884974 PMID: 1091515 best DB hits: BLAST: swissprot:P02363; RS9_ECOLI 30S RIBOSOMAL PROTEIN S9 -----; E=1e-22 gb:AAK02605.1; (AE006087) RpS9 [Pasteurella multocida]; E=5e-22 pir:C82308; ribosomal protein S9 VC0571 [imported] - Vibrio cholerae; E=2e-21 COG: rpsI; COG0103 Ribosomal protein S9; E=1e-23 PFAM: PF00380; Ribosomal protein S9/S16; E=7.2e-51; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.901
ybeY
Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
   
 
 0.898
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.897
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
   
   0.896
rpmG
Similar to 50S ribosomal protein L33; PMID: 9403685 best DB hits: BLAST: swissprot:O51357; RL33_BORBU 50S RIBOSOMAL PROTEIN L33 -----; E=0.32 PFAM: PF00471; Ribosomal protein L33; E=0.00011; Belongs to the bacterial ribosomal protein bL33 family.
  
 
 0.896
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.