STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB6701Hypothetical protein. (87 aa)    
Predicted Functional Partners:
RB6699
Hypothetical protein.
       0.714
RB6696
Hypothetical protein.
       0.530
RB6697
Hypothetical protein; Best DB hits: PFAM: PF01909; Nucleotidyltransferase domain; E=0.00053.
       0.530
RB6698
Hypothetical plasmid protein; PMID: 10413667 best DB hits: BLAST: gb:AAD24810.1; (AF003958) unknown [Acinetobacter sp. SUN]; E=0.004 swissprot:P05530; MCBG_ECOLI MCBG PROTEIN ----- pir: S00837; E=0.17 pir:I50531; transmembrane transporter - electric ray (Discopyge; E=0.26 PFAM: PF00805; Pentapeptide repeats (8 copies); E=3.4e-05.
       0.530
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.