STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB6738Hypothetical protein. (120 aa)    
Predicted Functional Partners:
RB13147
PMID: 7910580 best DB hits: BLAST: embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=7e-62 gb:AAB03341.1; (U62317) arylsulfatase A [Homo sapiens]; E=7e-62 gb:AAF63858.1; (AF112242) N-acetylgalactosamine-6-sulfate; E=3e-61 COG: aslA; COG3119 Arylsulfatase A and related enzymes; E=5e-31 PFAM: PF00884; Sulfatase; E=1.2e-107.
 
      0.624
GALNS-4
N-acetylgalactosamine 6-sulfate sulfatase (GALNS); PMID: 8020961 PMID: 1755850 PMID: 8001980 PMID: 1522213 best DB hits: BLAST: gb:AAF49287.1; (AE003522) CG7402 gene product [Drosophila; E=2e-38 gb:AAF49302.1; (AE003522) CG5584 gene product [Drosophila; E=2e-37 ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=2e-35 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=2e-31 PFAM: PF00884; Sulfatase; E=2.4e-44.
 
      0.559
RB6740
PMID: 9639599 best DB hits: BLAST: gb:AAC05180.1; (U74652) nonspecific acid phosphatase precursor; E=1e-105 PFAM: PF00702; haloacid dehalogenase-like hydr; E=0.0014.
       0.547
RB6736
Transposase; Best DB hits: BLAST: gb:AAD45539.1; U70376_1 (U70376) InsA [Streptomyces netropsis]; E=5e-33 gb:AAG60893.1; AF322013_12 (AF322013) ID460 [Bradyrhizobium; E=8e-33 ddbj:BAA19966.1; (D63923) transposase [Acetobacter pasteurianus]; E=1e-26.
       0.510
RB772
PMID: 8020961 best DB hits: BLAST: ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=3e-56 pir:S07089; arylsulfatase (EC 3.1.6.1) - sea urchin (Lytechinus; E=4e-56 embl:CAA34667.1; (X16679) arylsulfatase [Hemicentrotus; E=6e-56 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=1e-29 PA1689; COG1368 Phosphoglycerol transferase and related proteins,; E=6e-07 PA2333; COG3119 Arylsulfatase A and related enzymes; E=5e-05 PFAM: PF00884; Sulfatase; E=3.9e-110.
 
      0.509
RB6735
Hypothetical protein.
       0.507
arsA-5
Arylsulfatase A; PMID: 7910580 PMID: 1572648 best DB hits: BLAST: gb:AAB03341.1; (U62317) arylsulfatase A [Homo sapiens]; E=4e-58 embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=4e-58 pdb:1E2S; P Chain P, Crystal Structure Of An Arylsulfatase A; E=4e-57 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=5e-25 PFAM: PF00884; Sulfatase; E=3.3e-84.
 
      0.485
arsA
Arylsulfatase A; PMID: 7910580 PMID: 1572648 best DB hits: BLAST: embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=4e-61 gb:AAB03341.1; (U62317) arylsulfatase A [Homo sapiens]; E=4e-61 pdb:1E2S; P Chain P, Crystal Structure Of An Arylsulfatase A; E=4e-60 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=5e-33 PFAM: PF00884; Sulfatase; E=3.7e-106.
 
      0.484
RB760
N-acetylgalactosamine-6-sulfatase; PMID: 20164110 best DB hits: BLAST: gb:AAF63858.1; (AF112242) N-acetylgalactosamine-6-sulfate; E=7e-47 embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=8e-44 gb:AAB03341.1; (U62317) arylsulfatase A [Homo sapiens]; E=8e-44 COG: ydeN; COG3119 Arylsulfatase A and related enzymes; E=6e-26 PAB0793; COG2194 Predicted membrane-associated, metal-dependent; E=9e-06 Rv3077; COG3119 Arylsulfatase A and related enzymes; E=6e-04 PFAM: PF00884; Sulfatase; E=8.3e-90.
 
      0.460
RB6734
Hypothetical protein.
       0.443
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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