STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB7108Hypothetical protein. (91 aa)    
Predicted Functional Partners:
RB7106
Hypothetical protein.
       0.586
RB7102
Conserved hypothetical protein; Best DB hits: BLAST: swissprot:Q19200; STO1_CAEEL STO-1 PROTEIN ----- pir: T15971; E=0.006 embl:CAB94650.1; (AL359215) putative secreted protein; E=0.039 pir:E72322; conserved hypothetical protein - Thermotoga maritima; E=0.26.
       0.437
RB7104
Conserved hypothetical protein; PMID: 9477341 best DB hits: BLAST: embl:CAB64583.1; (AL135941) hypothetical protein L391.06; E=0.003 gb:AAK04726.1; AE006295_7 (AE006295) conserved hypothetical; E=0.038 ddbj:BAB10843.1; (AB009053) hypersensitive-induced response; E=0.88.
       0.437
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.