STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB7128Hypothetical protein. (85 aa)    
Predicted Functional Partners:
RB7127
Hypothetical protein.
       0.773
RB7129
Hypothetical protein.
       0.572
feoB
PMID: 8890205 best DB hits: BLAST: pir:F82744; ferrous iron transport protein B XF0933 [imported] -; E=7e-89 pir:T03547; probable ferrous iron transport protein b - Rhodobacter; E=3e-84 gb:AAB91270.1; (AE001111) iron (II) transporter (feoB-2); E=8e-80 COG: XF0933; COG0370 Ferrous ion uptake system protein FeoB (predicted; E=6e-90 PFAM: PF01926; GTPase of unknown function; E=0.029 PF02421; Ferrous iron transport protei; E=1.5e-56.
       0.572
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.