STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB7166ABC transporter, ATP-binding protein; PMID: 9389475 best DB hits: BLAST: pir:S74476; ABC-type transport protein slr1113 - Synechocystis sp; E=3e-48 pir:S76626; ABC-type transport protein sll0489 - Synechocystis sp.; E=2e-42 gb:AAB90107.1; (AE001025) ABC transporter, ATP-binding protein; E=2e-40 COG: slr1113; COG1131 ABC-type multidrug transport system, ATPase; E=2e-49 BH1054_2; COG0842 Permease component of an ABC-transporter; E=6e-41 PA3672; COG1131 ABC-type multidrug transport system, ATPase; E=2e-39 PFAM: PF00005; ABC transporter; E=9.2e-45. (312 aa)    
Predicted Functional Partners:
RB1216
Probable permease component of an ABC-transporter; PMID: 9403685 best DB hits: BLAST: pir:H70193; membrane spanning protein homolog - Lyme disease; E=6e-04 gb:AAD39630.1; AF033858_13 (AF033858) putative ABC transporter; E=0.074 pir:D69049; conserved hypothetical protein MTH1371 -; E=0.15 COG: BB0753; COG1277 Permease component of an ABC-transporter; E=5e-05.
  
   0.758
RB7161
Best DB hits: BLAST: pir:D75036; hypothetical protein PAB3319 - Pyrococcus abyssi (strain; E=3e-24 pir:C71127; hypothetical protein PHS025 - Pyrococcus horikoshii; E=1e-17 gb:AAB90424.1; (AE001047) A. fulgidus predicted coding region; E=9e-17 COG: PAB3319; COG1694 Predicted pyrophosphatase; E=3e-25.
 
     0.686
RB7162
Hypothetical protein-transmembrane prediction.
       0.679
RB6045
Hypothetical protein-transmembrane prediction.
  
   0.670
RB12409
Conserved hypothetical protein; PMID: 10216867 best DB hits: BLAST: gb:AAD30859.1; AF116251_2 (AF116251) BatB [Bacteroides fragilis]; E=0.007.
  
     0.656
RB7503
Conserved hypothetical protein-putative chloride channel; PMID: 11932238 PMID: 96127529 PMID: 8590279 best DB hits: BLAST: swissprot:Q55874; Y103_SYNY3 HYPOTHETICAL 45.8 KD PROTEIN SLL0103; E=5e-12 gb:AAF13350.1; AF121336_1 (AF121336) unknown [Eufolliculina; E=4e-11 embl:CAB75310.1; (AL139164) putative lipoprotein [Streptomyces; E=1e-10 COG: sll0103; COG2304 Protein containing von Willebrand factor (vWF) type; E=5e-13 yfbK; COG2304 Protein containing von Willebrand factor (vWF) type A; E=2e-09 DRA0331; COG2304 Protein containing von Willebrand factor (vWF) type; E=0.003 PFAM: PF00092; [...]
 
     0.629
fabZ-2
Probable hydroxymyristoyl-(acyl carrier protein) dehydratase; PMID: 7806516 best DB hits: BLAST: gb:AAK04875.1; AE006311_6 (AE006311); E=3e-11 pir:D70065; (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase; E=5e-11 gb:AAF98278.1; AF197933_8 (AF197933) beta-hydroxyacyl-ACP; E=9e-11 COG: BS_ywpB; COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier; E=5e-12 PFAM: PF01377; Thioester dehydrase; E=6e-11.
       0.615
RB9421
Similar to lipoprotein; Best DB hits: BLAST: embl:CAB75310.1; (AL139164) putative lipoprotein [Streptomyces; E=0.011.
  
     0.608
RB9424
Best DB hits: BLAST: pir:G70121; conserved hypothetical protein BB0175 - Lyme disease; E=4e-10 pir:G82493; conserved hypothetical protein VCA0174 [imported] -; E=6e-09 swissprot:P71761; YE80_MYCTU HYPOTHETICAL 34.3 KDA PROTEIN RV1480; E=1e-08 COG: BB0175; COG1721 Uncharacterized ACR; E=3e-11 PFAM: PF01882; Protein of unknown function DUF58; E=3.1e-15.
 
     0.568
acpP-2
Probable acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
       0.549
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.