STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB720N-acetyl-galactosamine-6-sulfatase (GALNS); PMID: 20164110 best DB hits: BLAST: gb:AAF63858.1; (AF112242) N-acetylgalactosamine-6-sulfate; E=2e-23 ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=1e-21 gb:AAF58475.1; (AE003821) CG8646 gene product [Drosophila; E=3e-19 COG: yidJ; COG3119 Arylsulfatase A and related enzymes; E=3e-15 VCA0802; COG1368 Phosphoglycerol transferase and related proteins,; E=3e-07 Rv0663; COG3119 Arylsulfatase A and related enzymes; E=5e-07 PFAM: PF00884; Sulfatase; E=4.9e-29. (446 aa)    
Predicted Functional Partners:
RB723
Hypothetical protein.
       0.460
RB5401
Hypothetical protein.
  
     0.459
RB736
Conserved hypothetical protein-putative rhamnosidase; PMID: 10632887 best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=1e-04 embl:CAB53341.1; (AJ238748) alfa-L-rhamnosidase [Clostridium; E=0.019.
 
     0.400
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.