STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB7221Hypothetical protein. (131 aa)    
Predicted Functional Partners:
cstA
Carbon starvation-induced protein; PMID: 99411980 best DB hits: BLAST: ddbj:BAB05512.1; (AP001513) carbon starvation-induced protein; E=3e-82 swissprot:O67304; CSTA_AQUAE CARBON STARVATION PROTEIN A HOMOLOG; E=5e-65 pir:E75032; carbon starvation protein A homolog PAB1554 [similarity]; E=1e-53 COG: BH1793; COG1966 Carbon starvation protein, predicted membrane; E=3e-83 yjiY; COG1966 Carbon starvation protein, predicted membrane protein; E=2e-47 jhp1095; COG1966 Carbon starvation protein, predicted membrane; E=3e-47 PFAM: PF02554; Carbon starvation protein CstA; E=2.2e-104.
       0.773
RB7217
Hypothetical protein.
       0.746
RB7219
Hypothetical protein.
       0.746
sphX
Phosphate ABC transporter, periplasmic phosphate-binding protein; PMID: 95075296 PMID: 7741855 best DB hits: BLAST: swissprot:P39665; SPHX_SYNP7 SPHX PROTEIN PRECURSOR -----pir:; E=9e-59 swissprot:Q55200; SPHX_SYNY3 SPHX PROTEIN HOMOLOG PRECURSOR; E=4e-56 gb:AAB89890.1; (AE001010) phosphate ABC transporter, periplasmic; E=3e-53 COG: sll0679; COG0226 ABC-type phosphate transport system, periplasmic; E=4e-57 PFAM: PF01449; Phosphate-binding protein; E=2.2e-64.
       0.573
trx-3
Thioredoxin reductase; Best DB hits: BLAST: gb:AAB64789.1; (U28372) Similar to Thioredoxin reductase (Swiss; E=2e-76 swissprot:P51978; TRXB_NEUCR THIOREDOXIN REDUCTASE ----- pir:; E=5e-75 gb:AAB68856.1; (U00059) Yhr106wp [Saccharomyces cerevisiae]; E=2e-74 COG: YDR353w; COG0492 Thioredoxin reductase/alkyl hydroperoxide reductase; E=1e-77 VNG1259G; COG0492 Thioredoxin reductase/alkyl hydroperoxide; E=5e-53 BS_trxB; COG0492 Thioredoxin reductase/alkyl hydroperoxide reductase; E=4e-48 PFAM: PF02032; Phytoene dehydrogenase related; E=0.056 PF00070; Pyridine nucleotide-disulphide; E=3.1e-09.
       0.570
RB7224
Hypothetical protein.
       0.539
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.