STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB7238Hypothetical protein-transmembrane prediction. (591 aa)    
Predicted Functional Partners:
RB7240
Hypothetical protein-transmembrane prediction; Best DB hits: BLAST: gb:AAD51954.1; (AF170528) glycoprotein IIb; GPIIb [Oryctolagus; E=0.85.
 
 
   0.876
RB9066
Similar to RTX family exoprotein; Best DB hits: BLAST: gb:AAG54838.1; AE005229_1 (AE005229) putative RTX family exoprotein; E=0.005 swissprot:Q99144; PEX5_YARLI PEROXISOMAL TARGETING SIGNAL RECEPTOR; E=0.056 pir:A72220; conserved hypothetical protein - Thermotoga maritima; E=0.084 COG: TM1695; COG0457 TPR-repeat-containing proteins; E=0.008 PFAM: PF00515; TPR Domain; E=0.28 PF01839; FG-GAP repeat; E=0.0027.
  
 
   0.724
RB6914
Probable acid secreted protein ASPIC; Best DB hits: BLAST: embl:CAB98267.1; (AJ276171) ASPIC [Homo sapiens]; E=1e-07 embl:CAB98268.1; (AJ276171) ASPIC [Homo sapiens] ----- embl:; E=1e-07 embl:CAB98269.1; (AJ276171) ASPIC [Homo sapiens]; E=1e-07 COG: aq_854; COG0457 TPR-repeat-containing proteins; E=0.004 PFAM: PF01839; FG-GAP repeat; E=0.037.
  
 
   0.723
RB10583
Conserved hypothetical protein-putative containing TPR-repeat; Best DB hits: BLAST: pir:B70374; conserved hypothetical protein aq_854 - Aquifex aeolicus; E=1e-05 ddbj:BAA91540.1; (AK001182) unnamed protein product [Homo; E=0.12 embl:CAB98267.1; (AJ276171) ASPIC [Homo sapiens]; E=0.12 COG: aq_854; COG0457 TPR-repeat-containing proteins; E=1e-06 PFAM: PF00515; TPR Domain; E=0.059.
  
     0.716
RB9073
Conserved hypothetical protein containing TPR domain; Best DB hits: PFAM: PF00515; TPR Domain; E=0.83.
  
     0.710
RB3534
Probable ASPIC; Best DB hits: BLAST: ddbj:BAA91540.1; (AK001182) unnamed protein product [Homo sapiens]; E=1e-05 embl:CAB98267.1; (AJ276171) ASPIC [Homo sapiens]; E=4e-05 embl:CAB98268.1; (AJ276171) ASPIC [Homo sapiens] -----embl:; E=4e-05.
  
     0.707
RB3382
Best DB hits: BLAST: pir:E69078; conserved hypothetical protein MTH1585 -; E=0.28.
  
     0.705
RB3388
Hypothetical protein; Best DB hits: BLAST: ddbj:BAA91540.1; (AK001182) unnamed protein product [Homo sapiens]; E=4e-06 embl:CAB98267.1; (AJ276171) ASPIC [Homo sapiens]; E=9e-06 embl:CAB98268.1; (AJ276171) ASPIC [Homo sapiens] -----embl:; E=9e-06 PFAM: PF02161; Progesterone receptor; E=0.75 PF01839; FG-GAP repeat; E=7.2e-05.
  
     0.699
RB11088
Similar to ASPIC; Best DB hits: BLAST: ddbj:BAA91540.1; (AK001182) unnamed protein product [Homo; E=0.027 embl:CAB98267.1; (AJ276171) ASPIC [Homo sapiens]; E=0.027 embl:CAB98268.1; (AJ276171) ASPIC [Homo sapiens] ----- embl:; E=0.027.
  
     0.695
RB3379
Conserved hypothetical protein; Best DB hits: BLAST: ddbj:BAA91540.1; (AK001182) unnamed protein product [Homo sapiens]; E=8e-05 embl:CAB98267.1; (AJ276171) ASPIC [Homo sapiens]; E=2e-04 embl:CAB98268.1; (AJ276171) ASPIC [Homo sapiens] -----embl:; E=2e-04 PFAM: PF00515; TPR Domain; E=1.9e-05.
  
     0.694
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.