STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimK-2PMID: 20437337 best DB hits: BLAST: pir:D82997; ribosomal protein S6 modification protein PA5197; E=3e-76 pir:E82096; ribosomal protein S6 modification protein VC2281; E=2e-74 swissprot:P17116; RIMK_ECOLI RIBOSOMAL PROTEIN S6 MODIFICATION; E=1e-60 COG: PA5197; COG0189 Glutathione synthase/Ribosomal protein S6; E=3e-77 rimK; COG0189 Glutathione synthase/Ribosomal protein S6 modification; E=1e-61 HI1531; COG0189 Glutathione synthase/Ribosomal protein S6; E=2e-50 PFAM: PF02080; Potassium channel; E=3.8e-10. (405 aa)    
Predicted Functional Partners:
RB7297
Conserved hypothetical protein; PMID: 20406833 best DB hits: BLAST: pir:D82096; hypothetical protein VC2280 [imported] - Vibrio cholerae; E=1e-25 pir:C82997; hypothetical protein PA5196 [imported] - Pseudomonas; E=6e-13 pir:B82234; hypothetical protein VC1162 [imported] - Vibrio cholerae; E=3e-07.
     0.989
RB4984
Succinate dehydrogenase subunit; PMID: 11016950 best DB hits: BLAST: pir:F82096; conserved hypothetical protein VC2282 [imported] -; E=7e-56 pir:T44958; hypothetical protein [imported] - Natronomonas pharaonis; E=6e-55 gb:AAG20249.1; (AE005100) succinate dehydrogenase subunit; Sdh; E=3e-21 COG: VC2282; COG2988 Succinylglutamate desuccinylase; E=7e-57.
     0.787
dnlI
Thermostable DNA ligase; PMID: 8843436 best DB hits: BLAST: embl:CAC01484.1; (AL391017) putative DNA ligase [Streptomyces; E=5e-32 swissprot:P56709; DNLI_PYRFU THERMOSTABLE DNA LIGASE; E=4e-30 embl:CAC21199.1; (AJ133713) DNA ligase [Thermococcus fumicolans]; E=4e-29 COG: VNG0881G; COG1793 ATP-dependent DNA ligase; E=5e-29 PFAM: PF01068; DNA ligase; E=1.2e-28.
      
 0.680
RB6375
Hypothetical protein.
      
 0.654
dinP
DNA-damage-inducible protein P; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
   
  
 0.606
miaB
Probable MiaB protein-putative tRNA-thiotransferase; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
     
 0.563
RB12640
Probable auxin-responsive-like protein; PMID: 11538549 best DB hits: BLAST: gb:AAD32141.1; AF123503_1 (AF123503) Nt-gh3 deduced protein; E=6e-16 pir:T00515; hypothetical protein T20D16.20 - Arabidopsis thaliana; E=1e-15 ddbj:BAA97524.1; (AB026634) auxin-responsive-like protein; E=1e-14.
      0.501
RB7296
Hypothetical protein.
       0.496
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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