STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB7455Conserved hypothetical protein; PMID: 20196006 best DB hits: BLAST: gb:AAF57876.1; (AE003803) CG6564 gene product [Drosophila; E=0.010 embl:CAA96576.1; (Z72495) ZP2 [Carassius auratus]; E=0.47. (838 aa)    
Predicted Functional Partners:
RB7460
Hypothetical protein.
       0.773
RB2797
Similar to cytochrome c-554 [precursor]; PMID: 8063110 best DB hits: BLAST: swissprot:Q57142; C554_NITEU CYTOCHROME C-554 PRECURSOR (C554); E=0.003 pdb:1FT5; A Chain A, Crystal Structure Of The Oxidized State Of; E=0.003.
  
     0.709
RB8117
Best DB hits: BLAST: ddbj:BAB06996.1; (AP001518) spore cortex protein [Bacillus; E=0.022 COG: BH3277; COG2244 Membrane protein involved in the export of O-antigen; E=0.002 PFAM: PF01943; Polysaccharide biosynthesis pro; E=0.05.
  
     0.698
RB13131
Similar to cysteine proteinase; PMID: 9389475 best DB hits: BLAST: gb:AAB89309.1; (AE000969) cysteine proteinase, putative; E=0.30 PFAM: PF01839; FG-GAP repeat; E=0.31.
  
     0.664
RB3371
Conserved hypothetical protein; PMID: 9634230 best DB hits: BLAST: swissprot:Q10552; Y893_MYCTU HYPOTHETICAL 36.1 KDA PROTEIN RV0893C; E=3e-10 swissprot:Q50726; YX99_MYCTU HYPOTHETICAL 38.1 KDA PROTEIN RV3399; E=2e-08 pir:A70645; hypothetical protein Rv0726c - Mycobacterium; E=6e-08 COG: Rv0893c; COG3315 O-Methyltransferase involved in polyketide; E=3e-11 PFAM: PF02409; Domain of unknown function DUF142; E=7e-05; Belongs to the UPF0677 family.
  
     0.655
uvrC
PMID: 10567266 best DB hits: BLAST: pir:C75407; excinuclease ABC chain C - Deinococcus radiodurans; E=5e-04 ddbj:BAA85760.1; (AB033748) UVR-C protein [Deinococcus; E=0.003 swissprot:P73580; UVRC_SYNY3 EXCINUCLEASE ABC SUBUNIT C -----; E=0.008 COG: DR1354; COG0322 Nuclease subunit of the excinuclease complex; E=4e-05 PFAM: PF01541; Endo/excinuclease amino termin; E=2.9e-05.
  
     0.642
RB7454
Hypothetical protein.
       0.628
RB12718
Conserved hypothetical protein-putative tRNA adenylyltransferase; PMID: 10910347 best DB hits: BLAST: gb:AAK00328.1; AF320250_1 (AF320250) YmdA [Lactobacillus; E=0.029 pir:F82689; tRNA adenylyltransferase XF1362 [imported] - Xylella; E=0.044 pir:D71218; hypothetical protein PH0007 - Pyrococcus horikoshii; E=0.054 COG: XF1362; COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; E=0.004 PH0007; COG2413 Uncharacterized ACR; E=0.005 PFAM: PF01966; HD domain; E=0.0033.
  
     0.622
RB2038
Best DB hits: BLAST: pir:T26963; hypothetical protein ZK1151.2a - Caenorhabditis elegans; E=0.089 pir:T26964; hypothetical protein ZK1151.2b - Caenorhabditis elegans; E=0.089 ddbj:BAA96036.1; (AB040945) KIAA1512 protein [Homo sapiens]; E=0.50 PFAM: PF00817; impB/mucB/samB family; E=0.24.
  
     0.614
RB1451
Similar to serine/threonine protein kinase related protein; PMID: 9371463 PMID: 11677609 best DB hits: BLAST: gb:AAG31169.1; (AF314961) unknown [Salmonella typhimurium]; E=0.043 gb:AAB89850.1; (AE001008) conserved hypothetical protein; E=0.049 pir:A82284; conserved hypothetical protein VC0762 [imported] -; E=0.13 COG: AF1399; COG1520 Uncharacterized proteins of WD40-like repeat family; E=0.005 PFAM: PF01011; PQQ enzyme repeat; E=5.4e-05.
  
     0.601
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.