STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB7549Hypothetical protein. (60 aa)    
Predicted Functional Partners:
RB7550
Hypothetical protein-transmembrane prediction.
       0.773
RB7554
Hypothetical protein-signal peptide and transmembrane prediction; PMID: 11823852.
       0.757
RB7555
Hypothetical protein.
       0.757
RB7557
Conserved hypothetical protein; Best DB hits: BLAST: swissprot:P70960; YWMC_BACSU HYPOTHETICAL 24.5 KDA PROTEIN IN; E=3e-05 embl:CAB75310.1; (AL139164) putative lipoprotein [Streptomyces; E=4e-05 swissprot:Q55874; Y103_SYNY3 HYPOTHETICAL 45.8 KD PROTEIN SLL0103; E=6e-05 COG: BS_ywmC; COG2304 Protein containing von Willebrand factor (vWF) type; E=3e-06 VCA0172; COG3035 Uncharacterized BCR; E=3e-05 PFAM: PF00092; von Willebrand factor type A domain; E=0.013.
       0.757
RB7559
Hypothetical protein-putative transporter.
       0.600
RB7548
Similar to syringomycin biosynthesis enzyme 2; PMID: 98007868 PMID: 99047670 best DB hits: BLAST: gb:AAF01812.1; AF187532_8 (AF187532) SnoK [Streptomyces nogalater]; E=1e-09 gb:AAD50521.1; (U25130) syringomycin biosynthesis enzyme 2; E=1e-09 gb:AAC71711.1; (AF061267) putative alpha-ketoglutarate-dependent; E=1e-07.
       0.571
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.