STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
idnTPMID: 9658018 best DB hits: BLAST: swissprot:P39344; IDNT_ECOLI GNT-II SYSTEM L-IDONATE TRANSPORTER; E=1e-14 ddbj:BAA83912.1; (AB024550) GNTP [Bacillus halodurans] -----; E=1e-14 swissprot:Q9ZIJ1; GNUT_PSEAE GLUCONATE PERMEASE ----- pir:; E=4e-12 COG: BH0805; COG2610 H+/gluconate symporter and related permeases; E=1e-15 PFAM: PF02447; GntP family permease; E=2.5e-34. (651 aa)    
Predicted Functional Partners:
fumC
Fumarate hydratase FumC; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
     
 0.573
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.