STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB7785Conserved hypothetical protein; PMID: 20150912 PMID: 97000351 best DB hits: BLAST: pir:B81402; hypothetical protein Cj0554 [imported] - Campylobacter; E=4e-57 embl:CAB56667.1; (AL121596) hypothetical protein SCF51A.15c; E=4e-54. (342 aa)    
Predicted Functional Partners:
cyaA-3
Adenylate cyclase 1; PMID: 9523018 PMID: 8418825 best DB hits: BLAST: swissprot:P40137; CYAA_STIAU ADENYLATE CYCLASE 1 (ATP; E=8e-24 pir:S74929; adenylate cyclase (EC 4.6.1.1) - Synechocystis sp; E=1e-23 ddbj:BAA13997.1; (D89622) adenylate cyclase [Anabaena sp.]; E=4e-23 COG: sll0646; COG2114 Adenylate cyclase, family 3 (some proteins contain; E=1e-24 slr1991_2; COG2114 Adenylate cyclase, family 3 (some proteins; E=3e-08 Rv1625c; COG2114 Adenylate cyclase, family 3 (some proteins contain; E=4e-08 PFAM: PF00211; Adenylate and Guanylate cyclase; E=2.7e-39.
       0.773
RB7786
Hypothetical protein.
       0.697
RB7791
Hypothetical protein-transmembrane prediction; PMID: 12024217.
 
     0.594
RB7789
Similar to tolB protein [precursor]; PMID: 8921895 best DB hits: BLAST: swissprot:P44677; TOLB_HAEIN TOLB PROTEIN PRECURSOR ----- pir:; E=0.67 pir:JC5213; tolB protein - Haemophilus influenzae -----gb:; E=0.72.
       0.520
RB7790
Hypothetical protein.
       0.520
RB4928
Probable aminopeptidase; PMID: 7934828 PMID: 1806041 PMID: 8665903 PMID: 2503378 best DB hits: BLAST: pir:G82759; hypothetical protein XF0820 [imported] - Xylella; E=5e-18 ddbj:BAA31158.1; (AB015725) aminopeptidase [Aeromonas caviae]; E=5e-11 ddbj:BAB07580.1; (AP001520) aminopeptidase [Bacillus halodurans]; E=1e-10 COG: XF0820; COG2234 Predicted aminopeptidases; E=5e-19 PFAM: PF02225; PA domain; E=0.0063 PF00595; PDZ domain (Also known as DHR o; E=1.1e-07.
 
     0.504
mntH
Manganese transport protein mntH1; PMID: 10844693 PMID: 10712688 best DB hits: BLAST: pir:T44945; hypothetical protein 6 [imported] - Natronobacterium; E=1e-48 swissprot:Q9RPF3; MNT1_PSEAE MANGANESE TRANSPORT PROTEIN MNTH1; E=1e-18 pir:B83105; probable transport protein PA4334 [imported] -; E=1e-18 COG: PA4334; COG1914 Mn2+ and Fe2+ transporters of the NRAMP family; E=1e-19 PFAM: PF01566; Natural resistance-associated macrop; E=0.00026.
 
     0.403
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.