STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB783Probable integral membrane efflux protein; Best DB hits: BLAST: swissprot:P74311; Y944_SYNY3 HYPOTHETICAL 42.4 KDA PROTEIN SLR0944; E=2e-86 pir:H81780; probable integral membrane efflux protein NMA2095; E=3e-47 gb:AAK04027.1; (AE006231) unknown [Pasteurella multocida]; E=7e-40 COG: slr0944; COG0798 Arsenite efflux pump ACR3 and related permeases; E=2e-87 PFAM: PF01758; Sodium Bile acid symporter family; E=7.8e-49. (409 aa)    
Predicted Functional Partners:
RB782
Hypothetical protein.
       0.777
RB779
Hypothetical protein.
       0.757
RB778
Hypothetical protein-signal peptide and transmembrane prediction; Best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038.
       0.746
RB785
Hypothetical protein.
       0.550
RB10818
PMID: 7798145 best DB hits: BLAST: swissprot:P39155; YWLE_BACSU PUTATIVE LOW MOLECULAR WEIGHT; E=1e-13 swissprot:Q45408; EPSP_BURSO PROBABLE LOW MOLECULAR WEIGHT; E=3e-10 ddbj:BAB07488.1; (AP001519) protein-tyrosine-phosphatase; E=1e-09 COG: BS_ywlE; COG0394 Protein-tyrosine-phosphatase; E=1e-14 VC1079; COG0009 Putative translation factor (SUA5); E=2e-06 BH2998; COG0394 Protein-tyrosine-phosphatase; E=8e-05 PFAM: PF01300; SUA5/yciO/yrdC family; E=0.14 PF01451; Low molecular weight phosphoty; E=2.2e-28; Belongs to the SUA5 family.
  
  
 0.542
arsC
Probable arsenate reductase; PMID: 10567266 PMID: 9537360 PMID: 8003493 best DB hits: BLAST: pir:F75607; arsenate reductase - Deinococcus radiodurans (strain R1); E=1e-04 swissprot:P45947; ARSC_BACSU ARSENATE REDUCTASE (ARSENICAL PUMP; E=0.001 pir:B70360; arsenate reductase - Aquifex aeolicus -----gb:; E=0.014 COG: DRA0123; COG0394 Protein-tyrosine-phosphatase; E=1e-05.
  
  
 0.521
glnS
glutaminyl-tRNA synthetase; PMID: 10984043 best DB hits: BLAST: pir:F83421; glutaminyl-tRNA synthetase PA1794 [imported] -; E=0.0 pdb:1QRU; A Chain A, Glutaminyl-Trna Synthetase Mutant I129t; E=1e-179 pdb:1QRS; A Chain A, Glutaminyl-Trna Synthetase Mutant D235n; E=1e-178 COG: PA1794; COG0008 Glutamyl- and glutaminyl-tRNA synthetases; E=0.0 PFAM: PF00749; tRNA synthetases class I (E and; E=1.2e-179.
 
      0.404
arsC-2
Arsenate reductase; PMID: 8674982 best DB hits: BLAST: pir:C81247; arsenate reductase NMB0005 [imported] - Neisseria; E=8e-26 gb:AAG57605.1; AE005479_3 (AE005479) putative oxidoreductase; E=6e-25 swissprot:P76569; YFGD_ECOLI PROTEIN YFGD ----- pir: F65025; E=6e-25 COG: NMB0005; COG1393 Arsenate reductase and related proteins,; E=8e-27 yfgD; COG1393 Arsenate reductase and related proteins, glutaredoxin; E=7e-26 VC2165; COG1393 Arsenate reductase and related proteins,; E=3e-25; Belongs to the ArsC family.
     
 0.402
RB12599
Conserved hypothetical protein-putative flavoprotein; PMID: 10567266 best DB hits: BLAST: pir:A75455; hypothetical protein - Deinococcus radiodurans (strain; E=2e-16 ddbj:BAB13746.1; (AB032601) azoreductase [Bacillus sp. OY1-2]; E=2e-05 gb:AAD13563.1; (AF080235) reductase homolog [Streptomyces; E=5e-04 COG: BH2050; COG0431 Predicted flavoprotein; E=6e-05.
     
 0.402
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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