STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB7931Hypothetical protein. (157 aa)    
Predicted Functional Partners:
pknB-6
Probable serine/threonine protein kinase; PMID: 99426839 best DB hits: BLAST: embl:CAA10713.1; (AJ132604) hypothetical protein [Lactococcus; E=1e-38 gb:AAK05985.1; AE006418_5 (AE006418) serinethreonine protein; E=8e-38 gb:AAD42851.1; AF159689_3 (AF159689) serinethreonine kinase PKN3; E=2e-37 COG: BS_yloP_1; COG0515 Serine/threonine protein kinases; E=3e-38 PFAM: PF01610; Transposase; E=0.64 PF00069; Protein kinase domain; E=7.4e-61.
       0.773
RB7929
Hypothetical protein.
       0.773
RB7926
Hypothetical protein; Best DB hits: PFAM: PF00009; Elongation factor Tu family; E=0.29; Belongs to the sigma-70 factor family.
       0.497
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.