STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB8052Conserved hypothetical protein; PMID: 98295987 best DB hits: BLAST: pir:G70979; hypothetical protein Rv3278c - Mycobacterium; E=0.59 PFAM: PF01944; Integral membrane protein DUF95; E=0.0077. (226 aa)    
Predicted Functional Partners:
RB8054
Similar to oocyte zinc finger protein; PMID: 2509712 best DB hits: BLAST: swissprot:P18746; ZO26_XENLA OOCYTE ZINC FINGER PROTEIN XLCOF26; E=0.84.
       0.773
RB3479
Hypothetical protein-putative general secretory pathway protein; PMID: 11254562 best DB hits: PFAM: PF00263; Bacterial type II and III secretion; E=0.021.
  
     0.734
RB12808
Hypothetical protein-signal peptide and transmembrane prediction.
  
     0.673
RB8077
Hypothetical protein-signal peptide and transmembrane prediction.
  
     0.669
RB6127
Hypothetical protein-signal peptide prediction; Best DB hits: PFAM: PF01842; ACT domain; E=0.55 PF00515; TPR Domain; E=0.051.
  
     0.668
RB3077
Hypothetical protein-putative cyclic nucleotide-binding protein.
 
     0.657
RB12056
Conserved hypothetical protein containing TPR domain; PMID: 10192388 best DB hits: BLAST: pir:T39943; hypothetical protein SPBC23E6.09 - fission yeast; E=2e-04 pir:C72048; tpr repeats-ct683 hypothetical protein - Chlamydophila; E=0.006 swissprot:P42810; YAG7_PSEAE HYPOTHETICAL PROTEIN PA4667 -----; E=0.24 COG: CPn0693; COG0457 TPR-repeat-containing proteins; E=6e-04 PFAM: PF00515; TPR Domain; E=0.0018 PF00903; Glyoxalase/Bleomycin resistance; E=0.85 PF00515; TPR Domain; E=0.52.
  
     0.572
RB8050
Hypothetical protein.
       0.565
RB12048
Best DB hits: BLAST: pir:T49412; hypothetical protein B1D4.270 [imported] - Neurospora; E=0.89 PFAM: PF00432; Prenyltransferase and squalene ox; E=0.026.
  
     0.559
RB11415
Conserved hypothetical protein; PMID: 4515613 PMID: 354508 PMID: 6221115 best DB hits: BLAST: gb:AAA96561.1; (J02459) ea59 (525) [bacteriophage lambda]; E=5e-05 pir:S49559; phage Hau3 resistance protein - Streptomyces lividans; E=2e-04 gb:AAK02366.1; (AE006063) unknown [Pasteurella multocida]; E=0.014 PFAM: PF02463; SMC domain N terminal domain; E=0.039.
  
     0.553
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.