STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB8054Similar to oocyte zinc finger protein; PMID: 2509712 best DB hits: BLAST: swissprot:P18746; ZO26_XENLA OOCYTE ZINC FINGER PROTEIN XLCOF26; E=0.84. (129 aa)    
Predicted Functional Partners:
RB8052
Conserved hypothetical protein; PMID: 98295987 best DB hits: BLAST: pir:G70979; hypothetical protein Rv3278c - Mycobacterium; E=0.59 PFAM: PF01944; Integral membrane protein DUF95; E=0.0077.
       0.773
RB8050
Hypothetical protein.
       0.565
devC
Exporter subunit devC-putative ABC transporter family protein; PMID: 98230330 best DB hits: BLAST: embl:CAA67986.1; (X99672) devC [Anabaena sp.]; E=2e-57 embl:CAA05976.1; (AJ003195) membrane spanning subunit [Anabaena; E=7e-57 pir:S76812; hypothetical protein - Synechocystis sp. (strain PCC; E=4e-53 COG: Rv0072; COG0577 Predicted permease; E=0.008 PFAM: PF02687; Predicted permease; E=5.7e-12.
       0.425
nrdR
Conserved hypothetical protein; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family.
       0.425
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.