STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB8082Conserved hypothetical protein-putative a deoxyribodipyrimidine photolyase-related protein; Best DB hits: BLAST: pir:S75597; hypothetical protein slr1343 - Synechocystis sp. (strain; E=6e-94 gb:AAG19190.1; (AE005016) Vng0705c [Halobacterium sp. NRC-1]; E=2e-91 pir:G82413; conserved hypothetical protein VCA0809 [imported] -; E=2e-83 COG: slr1343; COG3046 Deoxyribodipyrimidine photolyase-related proteins; E=6e-95. (566 aa)    
Predicted Functional Partners:
RB1129
Conserved hypothetical protein; PMID: 10952301 best DB hits: BLAST: pir:H82182; conserved hypothetical protein VC1582 [imported] -; E=1e-112 pir:G70374; hypothetical protein aq_863 - Aquifex aeolicus -----; E=2e-70 pir:E69745; hypothetical protein ybcD - Bacillus subtilis -----; E=7e-63 COG: VC1582; COG3002 Uncharacterized BCR; E=1e-113; Belongs to the UPF0753 family.
  
     0.654
RB12250
Conserved hypothetical protein; PMID: 10952301 best DB hits: BLAST: pir:H82471; hypothetical protein VCA0329 VCA0298 VCA0343; E=4e-11.
 
     0.595
RB11515
Conserved hypothetical protein; PMID: 10952301 best DB hits: BLAST: pir:H82471; hypothetical protein VCA0329 VCA0298 VCA0343; E=1e-09.
 
     0.592
hisA
PMID: 2664449 best DB hits: BLAST: swissprot:P74561; HIS4_SYNY3; E=3e-56 pir:A83003; phosphoribosylformimino-5-aminoimidazole carboxamide; E=5e-49 gb:AAF05093.1; AF150930_2 (AF150930) phosphoribosyl; E=2e-46 COG: slr0652; COG0106 Phosphoribosylformimino-5-aminoimidazole; E=3e-57 PA5141; COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide; E=5e-50 NMB0629; COG0106 Phosphoribosylformimino-5-aminoimidazole; E=6e-44 PFAM: PF00977; Histidine biosynthesis protein; E=4.7e-70.
       0.572
phr-3
Probable deoxyribodipyrimidine photolyase; PMID: 7813451 PMID: 2668276 best DB hits: BLAST: pir:A83065; hypothetical protein PA4657 [imported] - Pseudomonas; E=4e-47 swissprot:P12769; PHR_METTH DEOXYRIBODIPYRIMIDINE PHOTOLYASE (DNA; E=6e-41 swissprot:P34205; PHR_CARAU DEOXYRIBODIPYRIMIDINE PHOTOLYASE (DNA; E=4e-37 COG: PA4657; COG3380 Predicted NAD/FAD-dependent oxidoreductase; E=3e-48 MTH904; COG0415 Deoxyribodipyrimidine photolyase; E=5e-42 sll1135; COG3380 Predicted NAD/FAD-dependent oxidoreductase; E=1e-21 PFAM: PF00875; DNA photolyase; E=6.3e-06 PF02254; KTN NAD-binding domain; E= [...]
 
   
 0.482
RB1391
Hypothetical 317 kDa protein-putative nucleoside-diphosphate sugar epimerase; PMID: 11206551 best DB hits: BLAST: swissprot:Q10403; YM16_MYCTU HYPOTHETICAL 31.7 KDA PROTEIN RV2216; E=9e-44 swissprot:P77775; YFCH_ECOLI HYPOTHETICAL 32.7 KDA PROTEIN IN; E=2e-42 gb:AAG57433.1; AE005462_8 (AE005462) putative sugar nucleotide; E=4e-42 COG: Rv2216; COG1090 Predicted nucleoside-diphosphate sugar epimerases; E=8e-45.
      0.478
phr
DNA photolyase; May have a photoreceptor function. Binds DNA; probably functions as a transcriptional repressor (By similarity).
 
   
 0.472
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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