STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB8119Hypothetical protein. (142 aa)    
Predicted Functional Partners:
RB8117
Best DB hits: BLAST: ddbj:BAB06996.1; (AP001518) spore cortex protein [Bacillus; E=0.022 COG: BH3277; COG2244 Membrane protein involved in the export of O-antigen; E=0.002 PFAM: PF01943; Polysaccharide biosynthesis pro; E=0.05.
       0.773
fabZ-4
Probable beta-hydroxyacyl-ACP dehydratase; PMID: 7806516 best DB hits: BLAST: gb:AAF98278.1; AF197933_8 (AF197933) beta-hydroxyacyl-ACP; E=2e-14 gb:AAK04875.1; AE006311_6 (AE006311); E=3e-14 pir:C82731; (3r)-hydroxymyristoyl ACP dehydrase XF1044 [imported] -; E=6e-14 COG: XF1044; COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier; E=6e-15 PFAM: PF01377; Thioester dehydrase; E=2.1e-18 PF01575; MaoC like domain; E=0.0056.
       0.773
fabI-2
trans-2-enoyl-ACP reductase; PMID: 20138198 best DB hits: BLAST: gb:AAF05840.1; AF197058_1 (AF197058) trans-2-enoyl-ACP reductase; E=6e-31 ddbj:BAB06562.1; (AP001516) enoyl-[acyl-carrier protein]; E=5e-29 gb:AAD04184.1; (L10036) unknown [Nostoc sp. PCC 7120]; E=2e-28 COG: BH2843; COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH); E=5e-30 TM0441; COG1028 Dehydrogenases with different specificities (related; E=1e-09 BS_yfhR; COG1028 Dehydrogenases with different specificities; E=1e-06 PFAM: PF00678; Short chain dehydrogenase/redu; E=7.1e-05.
       0.773
gntR-2
Best DB hits: BLAST: pir:G69999; transcription regulator GntR related protein ytrA -; E=4e-13 pir:D72336; transcription regulator, GntR family - Thermotoga; E=9e-13 gb:AAC62421.1; (AF084104) hypothetical protein [Bacillus firmus]; E=1e-08 COG: BS_ytrA; COG1725 Predicted transcriptional regulators; E=4e-14 BH1940; COG1167 Transcriptional regulators containing a; E=3e-06 BH1164; COG1725 Predicted transcriptional regulators; E=5e-06 PFAM: PF00392; Bacterial regulatory proteins, gntR; E=0.0001.
       0.572
ilvE-2
Putative branched-chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
       0.556
RB8127
Hypothetical protein.
       0.429
RB8132
Hypothetical protein.
       0.429
RB8134
Conserved hypothetical protein-putative a helicase; PMID: 93188700 best DB hits: BLAST: embl:CAA19102.1; (AL023591) hypothetical protein MLCB1259.27; E=1e-95 swissprot:Q50739; YP59_MYCTU HYPOTHETICAL 47.5 KDA PROTEIN RV2559C; E=2e-91 embl:CAB93386.1; (AL357523) conserved ATPGTP binding protein; E=2e-90 COG: Rv2559c; COG2256 Uncharacterized ATPase related to the helicase; E=2e-92 ycaJ; COG2256 Uncharacterized ATPase related to the helicase subunit; E=4e-86 HI1590; COG2256 Uncharacterized ATPase related to the helicase; E=1e-85 PFAM: PF01057; Parvovirus non-structural pro; E=0.099 PF0091 [...]
       0.429
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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