STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB813Hypothetical protein. (78 aa)    
Predicted Functional Partners:
RB812
Hypothetical protein.
       0.773
RB814
Similar to transposase; PMID: 9761671 PMID: 11823852 best DB hits: BLAST: pir:H83522; conserved hypothetical protein PA0979 [imported] -; E=0.33 PFAM: PF01527; Transposase; E=4.2e-19.
       0.572
RB815
Transposase; PMID: 10384242 best DB hits: BLAST: gb:AAB58155.1; (U82621) hypothetical protein [Shigella flexneri]; E=3e-34 gb:AAF09022.1; (AF139596) unknown [Shigella flexneri]; E=3e-34 gb:AAC61713.1; (AF081284) Hp1 [Escherichia coli]; E=1e-33 COG: tra5_g4; COG2801 Putative transposase; E=1e-26 PFAM: PF00665; Integrase core domain; E=5e-39.
       0.572
RB809
Hypothetical protein.
       0.520
RB807
Putative transposase; PMID: 10708371 best DB hits: BLAST: gb:AAG55028.1; AE005248_9 (AE005248) putative receptor; E=4e-61 gb:AAG54539.1; AE005200_1 (AE005200) Z0271 gene product; E=1e-60 swissprot:P28917; YDCC_ECOLI H REPEAT-ASSOCIATED PROTEIN IN; E=1e-60 PFAM: PF01811; Transposase; E=1.3e-65.
       0.429
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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