STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB8163Best DB hits: BLAST: pir:F75496; conserved hypothetical protein - Deinococcus radiodurans; E=1e-63 gb:AAG19057.1; (AE005004) Vng0533h [Halobacterium sp. NRC-1]; E=5e-34 embl:CAB93731.1; (AL357613) hypothetical protein SC5F8.03c; E=9e-30 COG: DR0625; COG2013 Uncharacterized ACR; E=1e-64. (232 aa)    
Predicted Functional Partners:
exoA
Exodeoxyribonuclease; PMID: 1708495 best DB hits: BLAST: swissprot:P37454; EXOA_BACSU EXODEOXYRIBONUCLEASE ----- pir:; E=7e-78 pir:F64710; exodeoxyribonuclease - Helicobacter pylori (strain; E=3e-72 pir:C71809; exodeoxyribonuclease - Helicobacter pylori (strain J99); E=2e-71 COG: BS_exoA; COG0708 Exonuclease III; E=7e-79 PFAM: PF01181; Deoxyribonuclease I (DNase I); E=0.25 PF01260; AP endonuclease family 1; E=2e-108.
       0.780
RB8158
Hypothetical protein.
       0.773
RB8165
Hypothetical protein.
       0.737
RB8153
Conserved hypothetical protein; PMID: 8168477 PMID: 10360571 best DB hits: BLAST: swissprot:P56727; Y929_THEMA HYPOTHETICAL PROTEIN TM0929 -----; E=1e-09 embl:CAA57668.1; (X82178) orf1 [Thermotoga maritima]; E=0.34 gb:AAA65436.1; (U24145) orf1; upstream of ferrodoxin; Method:; E=0.34.
       0.651
RB8157
Conserved hypothetical protein; PMID: 99287316 best DB hits: BLAST: pir:B72315; conserved hypothetical protein - Thermotoga maritima; E=1e-25 pir:T35221; probable ATPGTP binding protein - Streptomyces; E=5e-15 pir:A75429; conserved hypothetical protein - Deinococcus radiodurans; E=1e-07 COG: TM0930; COG0714 MoxR-like ATPases; E=1e-26.
       0.651
RB8167
Best DB hits: BLAST: pir:G71299; conserved hypothetical protein TP0648 - syphilis; E=0.027 pir:S49376; hypothetical protein 3 - Pseudomonas aeruginosa -----; E=0.11 pir:F69210; conserved hypothetical protein MTH83 - Methanobacterium; E=0.20 COG: TP0648; COG0457 TPR-repeat-containing proteins; E=0.003 PFAM: PF00515; TPR Domain; E=0.0036.
       0.543
RB8171
Hypothetical protein-transmembrane prediction; PMID: 11259647.
       0.543
moxR-7
Probable MoxR-related protein; Best DB hits: BLAST: pir:C83106; conserved hypothetical protein PA4322 [imported] -; E=2e-61 pir:G71146; hypothetical protein PH0385 - Pyrococcus horikoshii; E=1e-60 pir:H82493; MoxR-related protein VCA0175 [imported] - Vibrio; E=2e-60 COG: PA4322; COG0714 MoxR-like ATPases; E=2e-62 PFAM: PF00004; ATPase family associated with; E=0.0029 PF01078; Magnesium chelatase, subunit; E=1.7e-06.
       0.442
RB8174
Conserved hypothetical protein; Best DB hits: BLAST: swissprot:P71761; YE80_MYCTU HYPOTHETICAL 34.3 KDA PROTEIN RV1480; E=2e-17 pir:G82493; conserved hypothetical protein VCA0174 [imported] -; E=1e-12 pir:H83261; hypothetical protein PA3071 [imported] - Pseudomonas; E=2e-12 COG: Rv1480; COG1721 Uncharacterized ACR; E=1e-18 PFAM: PF01882; Protein of unknown function DUF58; E=8.4e-16.
       0.442
RB8176
Similar to inter-alpha-trypsin inhibitor heavy chain H2 [Precursor]; PMID: 2450046 PMID: 2446322 PMID: 2462430 PMID: 3663330 PMID: 2476436 PMID: 1384548 best DB hits: BLAST: swissprot:P19823; ITH2_HUMAN INTER-ALPHA-TRYPSIN INHIBITOR HEAVY; E=0.69 ref:XP_011910.1; similar to inter-alpha (globulin) inhibitor, H2; E=0.69.
       0.442
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.