STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB8229Hypothetical protein. (99 aa)    
Predicted Functional Partners:
ilvH
Conserved hypothetical protein-putative acetolactate synthase small regulatory subunit; PMID: 98037514 best DB hits: BLAST: pir:A69115; hypothetical protein MTH1854 - Methanobacterium; E=4e-13 pir:D69083; hypothetical protein MTH162 - Methanobacterium; E=4e-09 gb:AAB89585.1; (AE000988) acetolactate synthase, small subunit,; E=5e-07 PFAM: PF01842; ACT domain; E=0.0014.
       0.596
RB8228
Hypothetical protein-signal peptide prediction.
       0.572
RB8227
Hypothetical protein-transmembrane prediction.
       0.473
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.