node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
asnS | aspS | RB13263 | RB8253 | asparaginyl-tRNA synthetase; PMID: 2693216 PMID: 1425658 PMID: 2009959 PMID: 1544480 best DB hits: BLAST: swissprot:P52276; SYN_SYNY3 PROBABLE ASPARAGINYL-TRNA SYNTHETASE; E=1e-151 gb:AAK02727.1; (AE006100) AsnS [Pasteurella multocida]; E=1e-150 pir:E82217; asparaginyl-tRNA synthetase VC1297 [imported] - Vibrio; E=1e-148 COG: sll0495; COG0017 Aspartyl/asparaginyl-tRNA synthetases; E=1e-152 PFAM: PF01336; OB-fold nucleic acid binding dom; E=6.8e-15 PF01409; tRNA synthetases class II (F); E=0.025 PF00152; tRNA synthetases class II (D, K; E=1.3e-132. | Aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | 0.400 |
asnS | gatA | RB13263 | RB4143 | asparaginyl-tRNA synthetase; PMID: 2693216 PMID: 1425658 PMID: 2009959 PMID: 1544480 best DB hits: BLAST: swissprot:P52276; SYN_SYNY3 PROBABLE ASPARAGINYL-TRNA SYNTHETASE; E=1e-151 gb:AAK02727.1; (AE006100) AsnS [Pasteurella multocida]; E=1e-150 pir:E82217; asparaginyl-tRNA synthetase VC1297 [imported] - Vibrio; E=1e-148 COG: sll0495; COG0017 Aspartyl/asparaginyl-tRNA synthetases; E=1e-152 PFAM: PF01336; OB-fold nucleic acid binding dom; E=6.8e-15 PF01409; tRNA synthetases class II (F); E=0.025 PF00152; tRNA synthetases class II (D, K; E=1.3e-132. | Glutamyl-tRNA(Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). | 0.991 |
asnS | gatB | RB13263 | RB10852 | asparaginyl-tRNA synthetase; PMID: 2693216 PMID: 1425658 PMID: 2009959 PMID: 1544480 best DB hits: BLAST: swissprot:P52276; SYN_SYNY3 PROBABLE ASPARAGINYL-TRNA SYNTHETASE; E=1e-151 gb:AAK02727.1; (AE006100) AsnS [Pasteurella multocida]; E=1e-150 pir:E82217; asparaginyl-tRNA synthetase VC1297 [imported] - Vibrio; E=1e-148 COG: sll0495; COG0017 Aspartyl/asparaginyl-tRNA synthetases; E=1e-152 PFAM: PF01336; OB-fold nucleic acid binding dom; E=6.8e-15 PF01409; tRNA synthetases class II (F); E=0.025 PF00152; tRNA synthetases class II (D, K; E=1.3e-132. | glutamyl-tRNA(Gln) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily. | 0.998 |
asnS | gatC | RB13263 | RB8359 | asparaginyl-tRNA synthetase; PMID: 2693216 PMID: 1425658 PMID: 2009959 PMID: 1544480 best DB hits: BLAST: swissprot:P52276; SYN_SYNY3 PROBABLE ASPARAGINYL-TRNA SYNTHETASE; E=1e-151 gb:AAK02727.1; (AE006100) AsnS [Pasteurella multocida]; E=1e-150 pir:E82217; asparaginyl-tRNA synthetase VC1297 [imported] - Vibrio; E=1e-148 COG: sll0495; COG0017 Aspartyl/asparaginyl-tRNA synthetases; E=1e-152 PFAM: PF01336; OB-fold nucleic acid binding dom; E=6.8e-15 PF01409; tRNA synthetases class II (F); E=0.025 PF00152; tRNA synthetases class II (D, K; E=1.3e-132. | glutamyl-tRNA (Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family. | 0.955 |
asnS | glnS | RB13263 | RB1578 | asparaginyl-tRNA synthetase; PMID: 2693216 PMID: 1425658 PMID: 2009959 PMID: 1544480 best DB hits: BLAST: swissprot:P52276; SYN_SYNY3 PROBABLE ASPARAGINYL-TRNA SYNTHETASE; E=1e-151 gb:AAK02727.1; (AE006100) AsnS [Pasteurella multocida]; E=1e-150 pir:E82217; asparaginyl-tRNA synthetase VC1297 [imported] - Vibrio; E=1e-148 COG: sll0495; COG0017 Aspartyl/asparaginyl-tRNA synthetases; E=1e-152 PFAM: PF01336; OB-fold nucleic acid binding dom; E=6.8e-15 PF01409; tRNA synthetases class II (F); E=0.025 PF00152; tRNA synthetases class II (D, K; E=1.3e-132. | glutaminyl-tRNA synthetase; PMID: 10984043 best DB hits: BLAST: pir:F83421; glutaminyl-tRNA synthetase PA1794 [imported] -; E=0.0 pdb:1QRU; A Chain A, Glutaminyl-Trna Synthetase Mutant I129t; E=1e-179 pdb:1QRS; A Chain A, Glutaminyl-Trna Synthetase Mutant D235n; E=1e-178 COG: PA1794; COG0008 Glutamyl- and glutaminyl-tRNA synthetases; E=0.0 PFAM: PF00749; tRNA synthetases class I (E and; E=1.2e-179. | 0.552 |
asnS | rplA | RB13263 | RB12839 | asparaginyl-tRNA synthetase; PMID: 2693216 PMID: 1425658 PMID: 2009959 PMID: 1544480 best DB hits: BLAST: swissprot:P52276; SYN_SYNY3 PROBABLE ASPARAGINYL-TRNA SYNTHETASE; E=1e-151 gb:AAK02727.1; (AE006100) AsnS [Pasteurella multocida]; E=1e-150 pir:E82217; asparaginyl-tRNA synthetase VC1297 [imported] - Vibrio; E=1e-148 COG: sll0495; COG0017 Aspartyl/asparaginyl-tRNA synthetases; E=1e-152 PFAM: PF01336; OB-fold nucleic acid binding dom; E=6.8e-15 PF01409; tRNA synthetases class II (F); E=0.025 PF00152; tRNA synthetases class II (D, K; E=1.3e-132. | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.464 |
aspS | asnS | RB8253 | RB13263 | Aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | asparaginyl-tRNA synthetase; PMID: 2693216 PMID: 1425658 PMID: 2009959 PMID: 1544480 best DB hits: BLAST: swissprot:P52276; SYN_SYNY3 PROBABLE ASPARAGINYL-TRNA SYNTHETASE; E=1e-151 gb:AAK02727.1; (AE006100) AsnS [Pasteurella multocida]; E=1e-150 pir:E82217; asparaginyl-tRNA synthetase VC1297 [imported] - Vibrio; E=1e-148 COG: sll0495; COG0017 Aspartyl/asparaginyl-tRNA synthetases; E=1e-152 PFAM: PF01336; OB-fold nucleic acid binding dom; E=6.8e-15 PF01409; tRNA synthetases class II (F); E=0.025 PF00152; tRNA synthetases class II (D, K; E=1.3e-132. | 0.400 |
aspS | gatA | RB8253 | RB4143 | Aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | Glutamyl-tRNA(Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). | 0.749 |
aspS | gatB | RB8253 | RB10852 | Aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | glutamyl-tRNA(Gln) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily. | 0.996 |
aspS | gatC | RB8253 | RB8359 | Aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | glutamyl-tRNA (Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family. | 0.927 |
aspS | glnS | RB8253 | RB1578 | Aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | glutaminyl-tRNA synthetase; PMID: 10984043 best DB hits: BLAST: pir:F83421; glutaminyl-tRNA synthetase PA1794 [imported] -; E=0.0 pdb:1QRU; A Chain A, Glutaminyl-Trna Synthetase Mutant I129t; E=1e-179 pdb:1QRS; A Chain A, Glutaminyl-Trna Synthetase Mutant D235n; E=1e-178 COG: PA1794; COG0008 Glutamyl- and glutaminyl-tRNA synthetases; E=0.0 PFAM: PF00749; tRNA synthetases class I (E and; E=1.2e-179. | 0.422 |
aspS | rplA | RB8253 | RB12839 | Aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.493 |
atpD | gatB | RB10213 | RB10852 | Probable ATP synthase delta chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family. | glutamyl-tRNA(Gln) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily. | 0.600 |
atpD | gatC | RB10213 | RB8359 | Probable ATP synthase delta chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family. | glutamyl-tRNA (Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family. | 0.754 |
atpD | rplA | RB10213 | RB12839 | Probable ATP synthase delta chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family. | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.886 |
atpD | rplJ | RB10213 | RB12840 | Probable ATP synthase delta chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family. | PMID: 8969501 best DB hits: BLAST: pir:T01743; ribosomal protein L10, chloroplast - common tobacco; E=3e-08 swissprot:P42923; RL10_BACSU 50S RIBOSOMAL PROTEIN L10 (BL5) (COLD; E=3e-08 gb:AAK05367.1; AE006359_5 (AE006359) 50S ribosomal protein L10; E=8e-08 COG: BS_rplJ; COG0244 Ribosomal protein L10; E=3e-09. | 0.887 |
atpD | rpsN | RB10213 | RB7854 | Probable ATP synthase delta chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family. | 30 S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | 0.871 |
gatA | asnS | RB4143 | RB13263 | Glutamyl-tRNA(Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). | asparaginyl-tRNA synthetase; PMID: 2693216 PMID: 1425658 PMID: 2009959 PMID: 1544480 best DB hits: BLAST: swissprot:P52276; SYN_SYNY3 PROBABLE ASPARAGINYL-TRNA SYNTHETASE; E=1e-151 gb:AAK02727.1; (AE006100) AsnS [Pasteurella multocida]; E=1e-150 pir:E82217; asparaginyl-tRNA synthetase VC1297 [imported] - Vibrio; E=1e-148 COG: sll0495; COG0017 Aspartyl/asparaginyl-tRNA synthetases; E=1e-152 PFAM: PF01336; OB-fold nucleic acid binding dom; E=6.8e-15 PF01409; tRNA synthetases class II (F); E=0.025 PF00152; tRNA synthetases class II (D, K; E=1.3e-132. | 0.991 |
gatA | aspS | RB4143 | RB8253 | Glutamyl-tRNA(Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). | Aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | 0.749 |
gatA | gatB | RB4143 | RB10852 | Glutamyl-tRNA(Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). | glutamyl-tRNA(Gln) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily. | 0.999 |