STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB8370Hypothetical protein; Best DB hits: PFAM: PF00602; Influenza RNA-dependent RNA poly; E=0.35. (689 aa)    
Predicted Functional Partners:
RB12734
Hypothetical protein-signal peptide and transmembrane prediction.
  
     0.758
RB6127
Hypothetical protein-signal peptide prediction; Best DB hits: PFAM: PF01842; ACT domain; E=0.55 PF00515; TPR Domain; E=0.051.
  
     0.755
RB3479
Hypothetical protein-putative general secretory pathway protein; PMID: 11254562 best DB hits: PFAM: PF00263; Bacterial type II and III secretion; E=0.021.
  
     0.740
RB9469
Hypothetical protein-putative transmembrane protein; Best DB hits: PFAM: PF01040; UbiA prenyltransferase family; E=0.14.
  
     0.737
RB8368
Best DB hits: BLAST: pir:F82221; conserved hypothetical protein VC1259 [imported] -; E=7e-86 pir:D83539; conserved hypothetical protein PA0858 [imported] -; E=4e-81 pir:G75436; conserved hypothetical protein - Deinococcus radiodurans; E=2e-67 COG: VC1259; COG1054 Uncharacterized enzyme related to sulfurtransferases; E=6e-87 sll0765; COG1054 Uncharacterized enzyme related to; E=5e-67 RP125; COG1054 Uncharacterized enzyme related to sulfurtransferases; E=2e-49 PFAM: PF00581; Rhodanese-like domain; E=1.5e-17; Belongs to the UPF0176 family.
       0.727
RB1954
Best DB hits: BLAST: pir:T30283; polyketide synthase - Streptomyces sp. (strain MA6548); E=0.11 gb:AAF86396.1; AF235504_17 (AF235504) FkbA [Streptomyces; E=0.11 pir:T30228; polyketide synthase - Streptomyces hygroscopicus -----; E=0.12.
  
     0.703
RB12732
Hypothetical protein; PMID: 12024217.
  
     0.680
RB7987
Hypothetical protein.
  
     0.679
RB6233
Hypothetical protein.
  
     0.677
RB716
Conserved hypothetical protein-putative related to sulfatases; Best DB hits: BLAST: gb:AAK03766.1; (AE006204) unknown [Pasteurella multocida]; E=0.34.
  
     0.674
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.