STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB8411Best DB hits: BLAST: pir:H83475; probable transcription regulator PA1359 [imported] -; E=0.067 embl:CAA64677.1; (X95394) aldehyde dehydrogenase-like protein; E=0.52 COG: PA1359; COG1396 Predicted transcriptional regulators; E=0.006 PFAM: PF01381; Helix-turn-helix; E=7.3e-11. (362 aa)    
Predicted Functional Partners:
RB8409
Hypothetical protein.
       0.678
RB8410
Hypothetical protein; Best DB hits: BLAST: embl:CAB57873.1; (AJ132579) coat protein readthrough [Oat golden; E=0.10 embl:CAB57874.1; (AJ132579) coat protein [Oat golden stripe; E=0.10.
       0.678
RB8407
Best DB hits: BLAST: pir:T37061; probable secreted protein - Streptomyces coelicolor; E=2e-27 pir:T35483; hypothetical protein SC6C5.12c SC6C5.12c - Streptomyces; E=2e-16 pir:T35506; hypothetical protein SC6E10.19c - Streptomyces; E=9e-11 COG: DR2293; COG3021 Uncharacterized BCR; E=7e-04 PFAM: PF01260; AP endonuclease family 1; E=0.88.
       0.507
RB8406
Hypothetical protein.
       0.460
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.