STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB842Hypothetical protein. (74 aa)    
Predicted Functional Partners:
RB841
Subtilisin; PMID: 1369081 best DB hits: BLAST: gb:AAB49694.1; (U89495) protease [Bacillus sp. PD498]; E=7e-19 pir:I39973; alkaline serine proteinase - Bacillus smithii -----; E=2e-18 swissprot:P35835; SUBN_BACNA SUBTILISIN NAT PRECURSOR -----; E=1e-17 COG: BS_aprE; COG1404 Subtilisin-like serine proteases; E=2e-18 PFAM: PF00082; Subtilase family; E=7.8e-27; Belongs to the peptidase S8 family.
       0.615
RB844
Probable surface-associated protein cshA precursor; PMID: 93125117 PMID: 95198547 PMID: 11759840 best DB hits: BLAST: pir:S61441; surface-associated protein cshA precursor - Streptococcus; E=6e-05 pir:S27982; cshA protein - Streptococcus gordonii (fragment); E=0.006 ddbj:BAB10333.1; (AB016872) gene_id:K21P3.2~unknown protein; E=0.025 PFAM: PF00404; Dockerin type I repeat; E=0.61.
       0.515
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.