STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB8441PMID: 87307953 best DB hits: BLAST: pir:I39942; penicillinase antirepressor penJ - Bacillus; E=1e-07 swissprot:P12287; BLAR_BACLI REGULATORY PROTEIN BLAR1 -----; E=2e-07. (907 aa)    
Predicted Functional Partners:
RB8445
Best DB hits: BLAST: pir:S74550; hypothetical protein slr0240 - Synechocystis sp. (strain; E=2e-07 swissprot:Q47839; COPY_ENTHR COPAB ATPASES METAL-FIST TYPE; E=0.047 swissprot:O07127; YPTY_LACSK HYPOTHETICAL 16.5 KD PROTEIN IN PTSI; E=0.13.
 
  
 0.929
RB757
Similar to beta-lactamase repressor protein; PMID: 3096969 PMID: 3305074 PMID: 3260234 PMID: 3040663 PMID: 3498148 best DB hits: BLAST: swissprot:P06555; BLAI_BACLI PENICILLINASE REPRESSOR (REGULATORY; E=0.24 pir:B28183; beta-lactamase repressor protein - Bacillus; E=0.34 swissprot:P26598; MECI_STAEP METHICILLIN RESISTANCE REGULATORY; E=0.60.
 
  
 0.809
RB13217
Probable beta-lactamase repressor; PMID: 1444307 best DB hits: BLAST: embl:CAC16667.1; (AJ302698) beta-lactamase repressor; E=2e-06 swissprot:P18415; BLAI_STAAU PENICILLINASE REPRESSOR (REGULATORY; E=7e-06 swissprot:P06555; BLAI_BACLI PENICILLINASE REPRESSOR (REGULATORY; E=8e-06.
 
  
 0.808
blaI
Probable Penicillinase repressor; PMID: 3096969 PMID: 3305074 PMID: 3260234 best DB hits: BLAST: swissprot:P06555; BLAI_BACLI PENICILLINASE REPRESSOR (REGULATORY; E=7e-10 pir:B28183; beta-lactamase repressor protein - Bacillus; E=8e-09 pir:S74550; hypothetical protein slr0240 - Synechocystis sp. (strain; E=2e-05 PFAM: PF00392; Bacterial regulatory proteins, gntR; E=0.082.
 
  
 0.805
RB7198
Conserved hypothetical protein; PMID: 8905231 best DB hits: BLAST: pir:S74550; hypothetical protein slr0240 - Synechocystis sp. (strain; E=9e-07 swissprot:O07127; YPTY_LACSK HYPOTHETICAL 16.5 KD PROTEIN IN PTSI; E=3e-04 swissprot:Q47839; COPY_ENTHR COPAB ATPASES METAL-FIST TYPE; E=0.052.
 
  
 0.801
RB756
Probable beta-lactamase regulatory protein; PMID: 3040663 PMID: 3260234 PMID: 2404938 best DB hits: BLAST: swissprot:P12287; BLAR_BACLI REGULATORY PROTEIN BLAR1 -----; E=7e-09 pir:I39942; penicillinase antirepressor penJ - Bacillus; E=8e-09 swissprot:P26597; MECR_STAEP METHICILLIN RESISTANCE MECR1 PROTEIN; E=4e-07.
  
     0.775
RB13215
Hypothetical protein-putative transmembrane protein.
  
     0.766
RB8450
Best DB hits: BLAST: pir:S75290; hypothetical protein sll1289 - Synechocystis sp. (strain; E=0.007 pir:G70687; hypothetical protein Rv1732c - Mycobacterium; E=0.037 ddbj:BAB05296.1; (AP001512) cytochrome c biogenesis (thioredoxin); E=0.53 COG: sll1289; COG0526 Thiol-disulfide isomerase and thioredoxins; E=7e-04.
 
     0.599
RB981
Conserved hypothetical protein-putative imidazolonepropionase or related amidohydrolase; PMID: 10192928 best DB hits: BLAST: ddbj:BAB06727.1; (AP001517) BH3008~unknown conserved protein; E=1e-19 pir:G72219; conserved hypothetical protein - Thermotoga maritima; E=3e-16 pir:G71130; hypothetical protein PH0812 - Pyrococcus horikoshii; E=2e-12 COG: BH3008; COG1228 Imidazolonepropionase and related amidohydrolases; E=1e-20 PFAM: PF01311; Bacterial export proteins, famil; E=0.13 PF02612; N-acetylglucosamine-6-phosphate; E=0.17.
  
     0.534
RB8448
Hypothetical protein.
       0.533
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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