STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csyQSimilar to CysQ protein homolog; Best DB hits: BLAST: swissprot:P46726; CYSQ_MYCLE CYSQ PROTEIN HOMOLOG ----- pir:; E=0.66. (88 aa)    
Predicted Functional Partners:
odc
Lysine/ornithine decarboxylase; PMID: 20528325 best DB hits: BLAST: ddbj:BAA24923.1; (AB011029) lysineornithine decarboxylase; E=5e-59 ddbj:BAA83427.1; (AB031066) ornithine decarboxylase [Nicotiana; E=1e-46 pir:T03035; ornithine decarboxylase (EC 4.1.1.17) - common tobacco; E=1e-46 COG: aq_728; COG0019 Diaminopimelate decarboxylase; E=8e-44 PFAM: PF02784; Pyridoxal-dependent decarboxy; E=4e-55 PF00278; Pyridoxal-dependent decarboxy; E=1.8e-17; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
       0.572
cht1
High affinity choline transporter; Best DB hits: BLAST: gb:AAG36945.1; (AF276872) sodium and chloride-dependent; E=8e-26 embl:CAC03719.1; (AJ401467) high affinity choline transporter; E=1e-25 ddbj:BAA90484.1; (AB030947) high-affinity choline transporter; E=2e-25 COG: PA1418; COG0591 Na+/proline, Na+/panthothenate symporters and; E=7e-20 panF; COG0591 Na+/proline, Na+/panthothenate symporters and related; E=3e-10 PFAM: PF00474; Sodium:solute symporter family; E=4.5e-05; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.547
fur-2
Probable transcription regulator FurR family; PMID: 8083178 PMID: 7590316 PMID: 9765558 best DB hits: BLAST: pir:B70423; transcription regulator FurR family - Aquifex aeolicus; E=2e-15 swissprot:P48796; FUR_CAMJE FERRIC UPTAKE REGULATION PROTEIN; E=7e-13 swissprot:Q51008; FUR_NEIGO FERRIC UPTAKE REGULATION PROTEIN; E=8e-13 COG: aq_1418; COG0735 Fe2+/Zn2+ uptake regulation proteins; E=2e-16 PFAM: PF01475; Ferric uptake regulator family; E=1.5e-22; Belongs to the Fur family.
       0.407
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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