STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB8484Best DB hits: BLAST: pir:T35585; hypothetical protein SC6G4.34 - Streptomyces coelicolor; E=4e-08 embl:CAB88460.1; (AL353815) hypothetical protein SCD6.31c; E=8e-05 pir:C83475; hypothetical protein PA1354 [imported] - Pseudomonas; E=0.002. (115 aa)    
Predicted Functional Partners:
RB8485
Probable sigma-70 factor, ECF subfamily; Best DB hits: BLAST: pir:T35586; hypothetical protein SC6G4.35 SC6G4.35 - Streptomyces; E=2e-47 pir:G83477; probable sigma-70 factor, ECF subfamily PA1351; E=8e-45 swissprot:Q52997; YDNY_RHIME HYPOTHETICAL 47.0 KDA PROTEIN IN DNAA; E=1e-35 COG: PA1351_1; COG1595 DNA-directed RNA polymerase specialized sigma; E=2e-17.
 
     0.954
RB555
PMID: 10984043 best DB hits: BLAST: pir:G83477; probable sigma-70 factor, ECF subfamily PA1351; E=1e-94 swissprot:Q52997; YDNY_RHIME HYPOTHETICAL 47.0 KDA PROTEIN IN DNAA; E=9e-61 pir:T35586; hypothetical protein SC6G4.35 SC6G4.35 - Streptomyces; E=3e-52 COG: PA1351_1; COG1595 DNA-directed RNA polymerase specialized sigma; E=5e-39 PFAM: PF00515; TPR Domain; E=0.00013.
 
     0.777
RB560
Conserved hypothetical protein; PMID: 10984043 best DB hits: BLAST: pir:E83477; conserved hypothetical protein PA1349 [imported] -; E=3e-18 swissprot:Q52996; YDNX_RHIME HYPOTHETICAL 13.6 KDA PROTEIN IN DNAA; E=1e-07 pir:C83475; hypothetical protein PA1354 [imported] - Pseudomonas; E=4e-06.
  
     0.749
RB563
Conserved hypothetical protein; PMID: 10984043 best DB hits: BLAST: pir:C83475; hypothetical protein PA1354 [imported] - Pseudomonas; E=7e-41 pir:T35585; hypothetical protein SC6G4.34 - Streptomyces; E=3e-14 pir:E83575; hypothetical protein PA0557 [imported] - Pseudomonas; E=7e-09.
 
     0.721
RB9550
Hypothetical protein; PMID: 11823852.
  
     0.565
RB9660
Conserved hypothetical protein-putative membrane associated or secreted protein; Best DB hits: BLAST: ddbj:BAB05804.1; (AP001514) BH2085~unknown [Bacillus halodurans]; E=5e-19.
 
     0.564
RB2939
Probable integral-membrane protein; PMID: 8843436 best DB hits: BLAST: embl:CAB66271.1; (AL136519) putative integral-membrane protein; E=1e-06 embl:CAB72202.1; (AL138851) putative integral-membrane protein; E=5e-06.
  
     0.525
psd-2
Phosphatidylserine decarboxylase precursor; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
       0.497
RB8479
Hypothetical protein-signal peptide and transmembrane prediction.
  
    0.400
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.