STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB8681Hypothetical protein. (148 aa)    
Predicted Functional Partners:
RB8683
Hypothetical protein.
       0.773
RB8684
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAG20046.1; (AE005084) Vng1839h [Halobacterium sp. NRC-1]; E=3e-46 embl:CAC11174.1; (AL445063) hypothetical protein [Thermoplasma; E=3e-40 pir:E72334; conserved hypothetical protein - Thermotoga maritima; E=6e-29 COG: VNG1839H; COG3367 Uncharacterized ACR; E=3e-47.
       0.757
ykfB
Chloromuconate cycloisomerase YkfB1; PMID: 2583528 best DB hits: BLAST: gb:AAG20045.1; (AE005084) chloromuconate cycloisomerase; YkfB1; E=3e-38 pir:H64881; hypothetical protein b1325 - Escherichia coli -----; E=1e-24 swissprot:P51981; YCJG_ECOLI HYPOTHETICAL 34.7 KD PROTEIN IN; E=8e-24 COG: VNG1837G; COG1441 O-succinylbenzoate synthase and related enzymes; E=3e-39 PFAM: PF02746; Mandelate racemase / muconate lacton; E=0.00038 PF01188; Mandelate racemase / muconate lacton; E=9.6e-23.
       0.757
RB8687
Probable beta-lactamase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide.
       0.582
RB8679
Probable oxidoreductase; Best DB hits: BLAST: gb:AAF23289.1; AC016661_14 (AC016661) putative oxidoreductase; E=1e-52 gb:AAG19065.1; (AE005005) Vng0542c [Halobacterium sp. NRC-1]; E=2e-45 pir:C75327; oxidoreductase, FAD-binding - Deinococcus radiodurans; E=2e-41 COG: VNG0542C; COG1233 Phytoene dehydrogenase and related proteins; E=2e-46 PFAM: PF00070; Pyridine nucleotide-disulphide; E=0.041 PF01593; Flavin containing amine oxidase; E=2.5e-05 PF01494; FAD binding domain; E=0.0013.
       0.564
RB8680
Cleavage and polyadenylation specifity factor-related protein; Best DB hits: BLAST: ddbj:BAA33615.1; (AB012956) unknown [Vibrio cholerae]; E=6e-99 pir:F82345; conserved hypothetical protein VC0264 [imported] -; E=9e-96 gb:AAD54657.1; AF090685_1 (AF090685) hypothetical protein [Vibrio; E=7e-67 COG: VC0264; COG1236 Predicted exonuclease of the beta-lactamase fold; E=9e-97 MJ1236; COG1782 Predicted metal-dependent RNase, consists of a; E=4e-39 MJ0162; COG1236 Predicted exonuclease of the beta-lactamase fold; E=1e-26 PFAM: PF00753; Metallo-beta-lactamase superfami; E=9.3e-07.
       0.564
RB8677
Best DB hits: BLAST: pir:S76850; hypothetical protein - Synechocystis sp. (strain PCC; E=0.56.
       0.518
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.