STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB8752Hypothetical protein. (372 aa)    
Predicted Functional Partners:
batD
Probable BatD; PMID: 99232513 best DB hits: BLAST: gb:AAD30861.1; AF116251_4 (AF116251) BatD [Bacteroides fragilis]; E=2e-10 gb:AAD30862.1; AF116251_5 (AF116251) BatE [Bacteroides fragilis]; E=4e-04 embl:CAA76834.1; (Y17720) SPINDLY protein [Petunia x hybrida]; E=0.59 PFAM: PF00515; TPR Domain; E=4e-07.
       0.768
batB
BatB; PMID: 99232513 best DB hits: BLAST: gb:AAD30859.1; AF116251_2 (AF116251) BatB [Bacteroides fragilis]; E=5e-25 gb:AAD30858.1; AF116251_1 (AF116251) BatA [Bacteroides fragilis]; E=8e-15 pir:E70121; hypothetical protein BB0173 - Lyme disease spirochete; E=1e-09 COG: BB0173; COG3035 Uncharacterized BCR; E=1e-10 yfbK; COG2304 Protein containing von Willebrand factor (vWF) type A; E=0.003 APE0605; COG3035 Uncharacterized BCR; E=0.006 PFAM: PF00092; von Willebrand factor type A domain; E=6e-05.
       0.768
batA
BatA; PMID: 99232513 best DB hits: BLAST: gb:AAD30858.1; AF116251_1 (AF116251) BatA [Bacteroides fragilis]; E=3e-38 pir:E82493; conserved hypothetical protein VCA0172 [imported] -; E=8e-29 pir:B83262; hypothetical protein PA3073 [imported] - Pseudomonas; E=4e-23 COG: VCA0172; COG3035 Uncharacterized BCR; E=8e-30 PFAM: PF00092; von Willebrand factor type A do; E=0.00041.
       0.768
RB8764
Hypothetical protein.
       0.768
RB8767
Best DB hits: BLAST: pir:G70121; conserved hypothetical protein BB0175 - Lyme disease; E=7e-30 swissprot:P71761; YE80_MYCTU HYPOTHETICAL 34.3 KDA PROTEIN RV1480; E=7e-27 pir:H83261; hypothetical protein PA3071 [imported] - Pseudomonas; E=3e-26 COG: BB0175; COG1721 Uncharacterized ACR; E=7e-31 PFAM: PF01882; Protein of unknown function DUF58; E=4.2e-38.
       0.768
RB8768
moxR-type regulator; Best DB hits: BLAST: pir:G83261; conserved hypothetical protein PA3070 [imported] -; E=9e-66 pir:H82493; MoxR-related protein VCA0175 [imported] - Vibrio; E=2e-65 pir:B70874; probable moxR protein - Mycobacterium tuberculosis; E=4e-63 COG: PA3070; COG0714 MoxR-like ATPases; E=9e-67 PFAM: PF01078; Magnesium chelatase, subunit Chl; E=1e-06.
       0.768
RB538
Best DB hits: BLAST: pir:T34935; hypothetical protein SC3F9.13 SC3F9.13 - Streptomyces; E=2e-43 pir:T36186; hypothetical protein SCE29.07c - Streptomyces coelicolor; E=2e-37.
  
     0.549
RB505
Similar to myosin heavy chain; PMID: 11403381 best DB hits: BLAST: embl:CAC28360.1; (AJ306290) myosin heavy chain [Toxocara canis]; E=0.054 gb:AAD29950.1; (AF111784) myosin heavy chain IIa [Homo sapiens]; E=0.19.
  
     0.520
RB10690
Best DB hits: BLAST: pir:T34936; hypothetical protein SC3F9.14 SC3F9.14 - Streptomyces; E=3e-83 pir:T36185; hypothetical protein SCE29.06c - Streptomyces coelicolor; E=2e-73 pir:B82537; phosphodiesterase-nucleotide pyrophosphatase precursor; E=0.094 COG: XF2599; COG1524 Uncharacterized proteins of the AP superfamily; E=0.009 PFAM: PF01663; Type I phosphodiesterase / nucle; E=0.18.
  
     0.473
RB8749
Hypothetical protein.
       0.446
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.