STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fucIConserved hypothetical protein-putative L-fucose isomerase; Best DB hits: BLAST: pir:H72393; hypothetical protein TM0307 - Thermotoga maritima; E=3e-12 COG: TM0307; COG2407 L-fucose isomerase and related proteins; E=3e-13. (542 aa)    
Predicted Functional Partners:
araB
L-ribulokinase; PMID: 9084180 best DB hits: BLAST: swissprot:P94524; ARAB_BACSU L-RIBULOKINASE ----- pir: D69587; E=3e-97 gb:AAD45717.1; AF160811_5 (AF160811) L-ribulokinase [Bacillus; E=3e-96 embl:CAA61586.1; (X89408) L-ribulokinase [Bacillus subtilis]; E=6e-96 COG: BS_araB; COG1069 Ribulose kinase; E=3e-98 TM0284; COG1070 Sugar (pentulose and hexulose) kinases; E=1e-14 TM1430; COG0554 Glycerol kinase; E=7e-06 PFAM: PF00370; FGGY family of carbohydrate kinas; E=7.8e-06 PF01869; BadF/BadG/BcrA/BcrD ATPase family; E=0.0012 PF02782; FGGY family of carbohydrate kinas; E=1.4e-16; Belongs t [...]
 
   
 0.824
RB8783
Best DB hits: BLAST: pir:T48821; hypothetical protein 68B2.50 [imported] - Neurospora; E=7e-21 pir:T37061; probable secreted protein - Streptomyces coelicolor; E=1e-05 pir:S71925; angel protein - fruit fly (Drosophila melanogaster); E=0.001.
       0.773
RB11670
PMID: 2974033 best DB hits: BLAST: pir:A75265; ferric enterobactin esterase-related protein -; E=0.002 COG: DR2506; COG2382 Enterochelin esterase and related enzymes; E=2e-04.
  
     0.479
RB8789
Best DB hits: BLAST: pir:T35497; hypothetical protein SC6E10.10 - Streptomyces coelicolor; E=0.14 gb:AAG54838.1; AE005229_1 (AE005229) putative RTX family exoprotein; E=0.87.
       0.478
yidR
Conserved hypothetical protein; Best DB hits: BLAST: swissprot:P31455; YIDR_ECOLI HYPOTHETICAL 46.4 KD PROTEIN IN; E=5e-86 gb:AAA62041.1; (L10328) f416 [Escherichia coli]; E=3e-85 gb:AAG58891.1; AE005600_9 (AE005600) orf, hypothetical protein; E=3e-85 COG: RP302; COG0823 Periplasmic component of the Tol biopolymer transport; E=0.004 PFAM: PF02039; Adrenomedullin; E=0.72.
       0.460
RB12468
Hypothetical protein-signal peptide and transmembrane prediction; Best DB hits: PFAM: PF00520; Ion transport protein; E=1.8e-05 PF01578; Cytochrome C assembly protein; E=0.81.
  
     0.421
RB11994
Conserved hypothetical protein-putative secreted protein; PMID: 9384377 best DB hits: BLAST: pir:B69988; hypothetical protein ytaP - Bacillus subtilis -----; E=0.20.
  
     0.407
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.