STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB8877Hypothetical protein. (89 aa)    
Predicted Functional Partners:
yniI
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAK05448.1; AE006367_4 (AE006367) HYPOTHETICAL PROTEIN; E=3e-10 pir:C69789; hypothetical protein ydjG - Bacillus subtilis -----; E=3e-09 ddbj:BAB05525.1; (AP001513) BH1806~unknown conserved protein; E=5e-09.
       0.549
ydjG
Best DB hits: BLAST: pir:C69789; hypothetical protein ydjG - Bacillus subtilis -----; E=2e-07 embl:CAA76859.1; (Y17797) hypothetical protein [Enterococcus; E=2e-07 gb:AAK05448.1; AE006367_4 (AE006367) HYPOTHETICAL PROTEIN; E=8e-04.
       0.549
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.