STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB8976Best DB hits: BLAST: pir:F72411; conserved hypothetical protein - Thermotoga maritima; E=3e-08 embl:CAB90971.1; (AL355832) hypothetical protein SCE22.04; E=6e-07 pir:B70601; hypothetical protein Rv0991c - Mycobacterium; E=2e-06 COG: TM0144; COG2331 Uncharacterized BCR; E=3e-09. (92 aa)    
Predicted Functional Partners:
RB8975
Hypothetical protein-signal peptide and transmembrane prediction.
       0.572
RB8978
Conserved hypothetical protein-putative metal-dependent hydrolase; Best DB hits: BLAST: pir:E83520; conserved hypothetical protein PA1012 [imported] -; E=4e-34 embl:CAB65404.1; (AJ012052) YycJ protein [Staphylococcus aureus]; E=3e-28 embl:CAB64977.1; (AJ012050) YycJ protein [Enterococcus faecalis]; E=2e-27 COG: PA1012; COG1235 Metal-dependent hydrolases of the beta-lactamase; E=4e-35 PAB0518; COG1237 Metal-dependent hydrolases of the beta-lactamase; E=0.005 BS_yqgX; COG0491 Zn-dependent hydrolases, including glyoxylases; E=0.007 PFAM: PF00753; Metallo-beta-lactamase superfamil; E=6.5e-14.
       0.492
RB6387
Conserved hypothetical protein; PMID: 10910347 best DB hits: BLAST: pir:G82780; conserved hypothetical protein XF0649 [imported] -; E=3e-13 embl:CAA97104.1; (Z72886) ORF YGR101w [Saccharomyces cerevisiae]; E=2e-10 pir:D71258; probable glpG protein - syphilis spirochete -----; E=1e-09 COG: XF0649; COG0705 Uncharacterized membrane protein (homolog of; E=3e-14 PFAM: PF01694; Rhomboid family; E=2.6e-11.
  
     0.418
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.