STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB8978Conserved hypothetical protein-putative metal-dependent hydrolase; Best DB hits: BLAST: pir:E83520; conserved hypothetical protein PA1012 [imported] -; E=4e-34 embl:CAB65404.1; (AJ012052) YycJ protein [Staphylococcus aureus]; E=3e-28 embl:CAB64977.1; (AJ012050) YycJ protein [Enterococcus faecalis]; E=2e-27 COG: PA1012; COG1235 Metal-dependent hydrolases of the beta-lactamase; E=4e-35 PAB0518; COG1237 Metal-dependent hydrolases of the beta-lactamase; E=0.005 BS_yqgX; COG0491 Zn-dependent hydrolases, including glyoxylases; E=0.007 PFAM: PF00753; Metallo-beta-lactamase superfamil; E=6.5e-14. (268 aa)    
Predicted Functional Partners:
RB8976
Best DB hits: BLAST: pir:F72411; conserved hypothetical protein - Thermotoga maritima; E=3e-08 embl:CAB90971.1; (AL355832) hypothetical protein SCE22.04; E=6e-07 pir:B70601; hypothetical protein Rv0991c - Mycobacterium; E=2e-06 COG: TM0144; COG2331 Uncharacterized BCR; E=3e-09.
       0.492
RB8979
Probable L-serine dehydratase, alpha chain; PMID: 2504697 PMID: 8436113 best DB hits: BLAST: swissprot:O34607; SDHA_BACSU PROBABLE L-SERINE DEHYDRATASE, ALPHA; E=1e-26 ddbj:BAB06215.1; (AP001515) L-serine dehydratase alpha subunit; E=9e-26 gb:AAK04929.1; AE006316_10 (AE006316) alpha-subuni L-serine; E=5e-25 COG: BS_ylpA; COG1760 L-serine deaminase; E=1e-27.
       0.430
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.