STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB8999Conserved hypothetical protein-putative transmembrane protein; PMID: 11214968. (773 aa)    
Predicted Functional Partners:
RB8992
Hypothetical protein-transmembrane prediction.
 
     0.947
RB9002
Hypothetical protein-transmembrane prediction.
 
     0.946
RB8988
Best DB hits: BLAST: pir:G70121; conserved hypothetical protein BB0175 - Lyme disease; E=2e-13 swissprot:P71761; YE80_MYCTU HYPOTHETICAL 34.3 KDA PROTEIN RV1480; E=1e-12 pir:D83106; hypothetical protein PA4323 [imported] - Pseudomonas; E=2e-11 COG: BB0175; COG1721 Uncharacterized ACR; E=2e-14 PFAM: PF01882; Protein of unknown function DUF; E=6.5e-23.
 
     0.931
cycX
Best DB hits: BLAST: pir:F75549; cytochrome c biogenesis protein CycX homolog DR0189; E=1e-15 pir:E69891; cytochrome c biogenesis protein CycX homolog homolog yneN; E=9e-14 swissprot:P35160; RESA_BACSU RESA PROTEIN -----pir: S45556; E=2e-13 COG: DR0189; COG0526 Thiol-disulfide isomerase and thioredoxins; E=1e-16 PFAM: PF00578; AhpC/TSA family; E=0.072 PF00085; Thioredoxin; E=9.1e-07.
 
     0.929
RB9009
Hypothetical protein-signal peptide prediction.
       0.773
RB9010
Hypothetical protein-signal peptide and transmembrane prediction.
       0.773
RB9011
Similar to squalene-hopene cyclase; PMID: 92104976 best DB hits: BLAST: pir:A43300; squalene-hopene cyclase (EC 5.4.99.-) - Alicyclobacillus; E=0.089.
       0.773
RB500
Hypothetical protein-signal peptide and transmembrane prediction.
  
     0.755
RB9017
Best DB hits: BLAST: pir:C82583; RNA polymerase sigma-H factor XF2239 [imported] -; E=0.001 embl:CAC01348.1; (AL390975) putative ECF-subfamily sigma factor; E=0.018 gb:AAC45221.1; (U87307) extracytoplasmic function alternative; E=0.030 COG: XF2239; COG1595 DNA-directed RNA polymerase specialized sigma; E=1e-04 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=0.016 PF00196; Bacterial regulatory proteins,; E=0.13.
 
     0.722
RB6796
Hypothetical protein.
  
     0.717
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.