STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB9026Probable NADH-dependent dyhydrogenase; Best DB hits: BLAST: swissprot:O05389; YRBE_BACSU HYPOTHETICAL 37.8 KDA PROTEIN IN; E=2e-08 swissprot:P40332; YISS_BACSU HYPOTHETICAL 37.5 KD PROTEIN IN; E=1e-07 ddbj:BAB04967.1; (AP001511) NADH-dependent dyhydrogenase; E=1e-06 COG: BS_yrbE; COG0673 Predicted dehydrogenases and related proteins; E=2e-09 PFAM: PF01408; Oxidoreductase family, NAD-bin; E=3.2e-25. (473 aa)    
Predicted Functional Partners:
RB5644
Probable secreted glycosyl hydrolase; PMID: 8843436 best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=6e-04 embl:CAB94634.1; (AL359215) putative secreted glycosyl hydrolase; E=7e-04 embl:CAB45032.1; (AL078635) putative large multi-functional; E=0.055.
  
     0.732
RB9196
Probable secreted glycosyl hydrolase; Best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=1e-05 embl:CAB94634.1; (AL359215) putative secreted glycosyl hydrolase; E=1e-04.
 
    0.716
RB9849
Best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=3e-04.
  
     0.693
RB9982
3-chlorobenzoate-3,4-dioxygenase dyhydrogenase related protein; Best DB hits: BLAST: embl:CAC24034.1; (AL512980) ORF-c34_017 [Sulfolobus solfataricus]; E=1e-11 pir:H69216; 3-chlorobenzoate-3,4-dioxygenase dyhydrogenase related; E=3e-10 pir:T36464; probable oxidoreductase - Streptomyces coelicolor; E=2e-09 COG: MTH875; COG0673 Predicted dehydrogenases and related proteins; E=3e-11 PFAM: PF01408; Oxidoreductase family, NAD-bin; E=1.1e-09 PF02894; Oxidoreductase family, C-termi; E=0.0018.
  
     0.650
RB1854
Best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=5e-22 embl:CAB94634.1; (AL359215) putative secreted glycosyl hydrolase; E=1e-12 pir:T35029; hypothetical protein SC4C6.21c - Streptomyces coelicolor; E=8e-05.
  
     0.649
RB4707
Probable large multifunctional protein-putative glycosyl hydrolase; Best DB hits: BLAST: embl:CAB45032.1; (AL078635) putative large multi-functional; E=6e-13 embl:CAB58265.1; (AL121849) putative multi-domain protein; E=3e-10.
  
     0.645
RB273
Probable secreted glycosyl hydrolase; Best DB hits: BLAST: embl:CAB94634.1; (AL359215) putative secreted glycosyl hydrolase; E=7e-08 pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=1e-07 embl:CAB45032.1; (AL078635) putative large multi-functional; E=0.002.
  
     0.641
RB3944
Conserved hypothetical protein; Best DB hits: BLAST: embl:CAB94634.1; (AL359215) putative secreted glycosyl hydrolase; E=9e-10 pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=5e-08 embl:CAB45032.1; (AL078635) putative large multi-functional; E=0.001.
  
     0.628
RB774
PMID: 8843436 best DB hits: BLAST: embl:CAB45032.1; (AL078635) putative large multi-functional; E=7e-23 embl:CAB58265.1; (AL121849) putative multi-domain protein; E=5e-21 pir:T36423; probable large, multifunctional secreted protein -; E=0.048.
  
     0.626
RB3635
Probable secreted glycosyl hydrolase; PMID: 8843436 best DB hits: BLAST: embl:CAB94634.1; (AL359215) putative secreted glycosyl hydrolase; E=4e-06 pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=3e-05 pir:T35028; probable glycosyl hydrolase - Streptomyces coelicolor; E=2e-04.
  
     0.621
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.