STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB905Hypothetical protein-transmembrane prediction; Best DB hits: PFAM: PF00036; EF hand; E=0.00036. (168 aa)    
Predicted Functional Partners:
RB908
Hypothetical protein-transmembrane prediction.
       0.592
RB912
Similar to ECF-family RNA polymerase sigma factor; PMID: 8052622 best DB hits: BLAST: swissprot:P45215; YE59_HAEIN PROBABLE RNA POLYMERASE SIGMA FACTOR; E=0.28 embl:CAB55836.1; (AJ249581) Sig15 protein [Streptomyces; E=0.38 pir:F81002; probable sigma factor, NMB2144 [imported] - Neisseria; E=0.79 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=5.8e-10.
       0.592
RB900
Hypothetical protein-signal peptide prediction.
       0.507
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.