STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB9053Best DB hits: BLAST: pir:F69009; probable membrane protein MTH1074 - Methanobacterium; E=1e-19 pir:T28679; fibrinogen-binding protein homolog - Staphylococcus aureus; E=0.008 pir:B75556; hypothetical protein - Deinococcus radiodurans (strain R1); E=0.059 PFAM: PF01345; Domain of unknown function DUF11; E=0.14. (1521 aa)    
Predicted Functional Partners:
RB9050
Hypothetical protein.
       0.510
RB10149
Best DB hits: BLAST: swissprot:P33450; FAT_DROME CADHERIN-RELATED TUMOR SUPPRESSOR; E=0.68 pir:IJFFTM; cadherin-related tumor suppressor precursor - fruit fly; E=0.68 gb:AAF51036.1; (AE003577) ft gene product [Drosophila melanogaster]; E=0.68 PFAM: PF00028; Cadherin domain; E=0.014 PF00801; PKD domain; E=0.0048 PF02101; Ocular albinism type 1 protei; E=0.26.
  
   0.481
cpo
Vanadium chloroperoxidase; PMID: 7744081 best DB hits: BLAST: swissprot:P49053; PRXC_CURIN VANADIUM CHLOROPEROXIDASE (VCPO); E=2e-25 pdb:1VNS; Recombinant Apo-Chloroperoxidase From Curvularia; E=2e-25 pdb:1VNF; Chloroperoxidase From The Fungus Curvularia; E=1e-24 PFAM: PF00404; Dockerin type I repeat; E=0.4 PF02328; Vanadium chloroperoxidase; E=1.5e-20.
  
   0.462
RB1767
60 kDa outer membrane protein; PMID: 2402463 best DB hits: BLAST: swissprot:P23700; OM6_CHLPN 60 KDA OUTER MEMBRANE PROTEIN; E=8e-23 gb:AAG60550.1; (AF240773) 60 kDa cysteine-rich membrane complex; E=3e-21 swissprot:P26758; OM6C_CHLTR 60 KDA OUTER MEMBRANE PROTEIN,; E=5e-21.
  
     0.454
RB12697
Conserved hypothetical protein-putative adhesin; Best DB hits: BLAST: embl:CAC19834.1; (AJ401093) hypothetical protein [Actinomyces; E=0.065 ddbj:BAB10333.1; (AB016872) gene_id:K21P3.2~unknown protein; E=0.081 pir:T28679; fibrinogen-binding protein homolog - Staphylococcus; E=0.26 PFAM: PF00404; Dockerin type I repeat; E=0.01.
  
     0.441
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.